RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 SOGA3Q5TF21 947 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 CRNKL1Q9BZJ0 848 aaKnown RBP4.4□□□□□ -1.7
RTN4-208ENST00000404909 MYH7P12883 1935 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 USP17L3A6NCW0 530 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 USP17L4A6NCW7 530 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 BTDP43251 543 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 USP5P45974 858 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 RBM5P52756 815 aaKnown RBP eCLIP4.4□□□□□ -1.7
RTN4-208ENST00000404909 TRDNQ13061 729 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 TSGA10IPQ3SY00 556 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 GRIPAP1Q4V328 841 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 USP17L1Q7RTZ2 530 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 RALYLQ86SE5 291 aaKnown RBP4.4□□□□□ -1.7
RTN4-208ENST00000404909 SH3RF3Q8TEJ3 882 aaPredicted RBP4.4□□□□□ -1.7
RTN4-208ENST00000404909 PSMD1Q99460 953 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 TM6SF1Q9BZW5 370 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 FHDC1Q9C0D6 1143 aaPredicted RBP4.4□□□□□ -1.7
RTN4-208ENST00000404909 TAOK3Q9H2K8 898 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 INCENPQ9NQS7 918 aa4.4□□□□□ -1.7
RTN4-208ENST00000404909 MYH13Q9UKX3 1938 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 MROH7-TTC4A0A0A0MT08 1334 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 CYP2D7A0A087X1C5 515 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 RPS6KB1P23443 525 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 RRP12Q5JTH9 1297 aaKnown RBP4.4□□□□□ -1.71
RTN4-208ENST00000404909 STRIP1Q5VSL9 837 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 SLF2Q8IX21 1173 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 TMX3Q96JJ7 454 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 NAP1L2Q9ULW6 460 aaPredicted RBP4.4□□□□□ -1.71
RTN4-208ENST00000404909 LTBP1Q14766 1721 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 CHD4Q14839 1912 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 YDJCA8MPS7 323 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 USP17L12C9JPN9 530 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 USP17L21D6R901 530 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 SMIM22K7EJ46 135 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 MCM2P49736 904 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 TBC1D10CQ8IV04 446 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 NIM1KQ8IY84 436 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 TGFBRAP1Q8WUH2 860 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 JDP2Q8WYK2 163 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 IL17RAQ96F46 866 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 TTC14Q96N46 770 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 MCM9Q9NXL9 1143 aa4.4□□□□□ -1.71
RTN4-208ENST00000404909 RPAP1Q9BWH6 1393 aaPredicted RBP4.39□□□□□ -1.71
RTN4-208ENST00000404909 DTNBO60941 627 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 HMGB1P09429 215 aaKnown RBP4.39□□□□□ -1.71
RTN4-208ENST00000404909 IARSP41252 1262 aaKnown RBP4.39□□□□□ -1.71
RTN4-208ENST00000404909 PPARAQ07869 468 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 STK3Q13188 491 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 DACT2Q5SW24 774 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 Q6ZUG5 572 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 DHX32Q7L7V1 743 aaKnown RBP4.39□□□□□ -1.71
RTN4-208ENST00000404909 MAPKAPK5Q8IW41 473 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 TEX11Q8IYF3 940 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 NCOA7Q8NI08 942 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 NBPF3Q9H094 633 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 DCP1AQ9NPI6 582 aaPredicted RBP4.39□□□□□ -1.71
RTN4-208ENST00000404909 DAGLAQ9Y4D2 1042 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 DOCK2Q92608 1830 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 B4E1Z4 1266 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 NFKBIEO00221 500 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 PSMD14O00487 310 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 ZBTB22O15209 634 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 PRDM1O75626 825 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 RASSF7Q02833 373 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 PICALMQ13492 652 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 ALX1Q15699 326 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 MFSD6Q6ZSS7 791 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 BRF1Q92994 677 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 TEKT1Q969V4 418 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 SAP30BPQ9UHR5 308 aaKnown RBP4.39□□□□□ -1.71
RTN4-208ENST00000404909 LIMCH1Q9UPQ0 1083 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 SUGT1Q9Y2Z0 365 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 ZBTB12Q9Y330 459 aaPredicted RBP4.39□□□□□ -1.71
RTN4-208ENST00000404909 SNED1Q8TER0 1413 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 GPR75-ASB3A0A0A6YYF3 556 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 USP17L8P0C7I0 530 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 CYP2D6P10635 497 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 EVX2Q03828 476 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 AKNAD1Q5T1N1 836 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 CTR9Q6PD62 1173 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 ATP8A2Q9NTI2 1148 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 TPCN1Q9ULQ1 816 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 ZNRF3Q9ULT6 936 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 PCDHAC2Q9Y5I4 1007 aa4.39□□□□□ -1.71
RTN4-208ENST00000404909 NEDD4P46934 1319 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 PRC1O43663 620 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 KDM4AO75164 1064 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 LARGE1O95461 756 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 POLR3DP05423 398 aaPredicted RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 PLCG2P16885 1265 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 MCM5P33992 734 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 CRKP46108 304 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 PPP4CP60510 307 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 TOB2Q14106 344 aaPredicted RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 ANKRD1Q15327 319 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 TMED8Q6PL24 325 aaPredicted RBP4.38□□□□□ -1.71
RTN4-208ENST00000404909 ARHGAP27Q6ZUM4 889 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 NECAB1Q8N987 351 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 NKX2-3Q8TAU0 364 aa4.38□□□□□ -1.71
RTN4-208ENST00000404909 GPHNQ9NQX3 736 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms