RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 CHGBP05060 677 aa35.49■■■■□ 3.27
USP42-202ENST00000404008 BTDP43251 543 aa35.49■■■■□ 3.27
USP42-202ENST00000404008 RILPL2Q969X0 211 aa35.49■■■■□ 3.27
USP42-202ENST00000404008 TDRD3Q9H7E2 651 aaKnown RBP35.49■■■■□ 3.27
USP42-202ENST00000404008 GGA3Q9NZ52 723 aa35.49■■■■□ 3.27
USP42-202ENST00000404008 SPDYE2Q495Y8 402 aa35.48■■■■□ 3.27
USP42-202ENST00000404008 ANGEL2Q5VTE6 544 aaKnown RBP35.48■■■■□ 3.27
USP42-202ENST00000404008 CDK5RAP2Q96SN8 1893 aa35.47■■■■□ 3.27
USP42-202ENST00000404008 UBE3CQ15386 1083 aa35.47■■■■□ 3.27
USP42-202ENST00000404008 LRRFIP1Q32MZ4 808 aaKnown RBP35.47■■■■□ 3.27
USP42-202ENST00000404008 SLFNL1Q499Z3 407 aa35.47■■■■□ 3.27
USP42-202ENST00000404008 PITPNM2Q9BZ72 1349 aa35.47■■■■□ 3.27
USP42-202ENST00000404008 RFX7Q2KHR2 1363 aa35.46■■■■□ 3.27
USP42-202ENST00000404008 CLRN2A0PK11 232 aa35.46■■■■□ 3.27
USP42-202ENST00000404008 RNF113AO15541 343 aaKnown RBP35.46■■■■□ 3.27
USP42-202ENST00000404008 ZFYP08048 801 aaPredicted RBP35.46■■■■□ 3.27
USP42-202ENST00000404008 CDC42EP5Q6NZY7 148 aa35.46■■■■□ 3.27
USP42-202ENST00000404008 ZNF70Q9UC06 446 aaPredicted RBP35.46■■■■□ 3.27
USP42-202ENST00000404008 TICAM2Q86XR7 235 aa35.45■■■■□ 3.27
USP42-202ENST00000404008 NOL10Q9BSC4 688 aaKnown RBP35.45■■■■□ 3.27
USP42-202ENST00000404008 AATFQ9NY61 560 aaKnown RBP eCLIP35.45■■■■□ 3.27
USP42-202ENST00000404008 FOCADQ5VW36 1801 aa35.44■■■■□ 3.26
USP42-202ENST00000404008 BAG3O95817 575 aa35.44■■■■□ 3.26
USP42-202ENST00000404008 SDSP20132 328 aa35.44■■■■□ 3.26
USP42-202ENST00000404008 PPP4CP60510 307 aa35.44■■■■□ 3.26
USP42-202ENST00000404008 USP40Q9NVE5 1235 aa35.44■■■■□ 3.26
USP42-202ENST00000404008 TOMM70O94826 608 aa35.43■■■■□ 3.26
USP42-202ENST00000404008 CHADLQ6NUI6 762 aa35.43■■■■□ 3.26
USP42-202ENST00000404008 MIGA1Q8NAN2 632 aa35.43■■■■□ 3.26
USP42-202ENST00000404008 DCPSQ96C86 337 aaKnown RBP35.43■■■■□ 3.26
USP42-202ENST00000404008 RHBDL3P58872 404 aa35.42■■■■□ 3.26
USP42-202ENST00000404008 MAP1SQ66K74 1059 aaPredicted RBP35.42■■■■□ 3.26
USP42-202ENST00000404008 APOBEC3FQ8IUX4 373 aaKnown RBP35.41■■■■□ 3.26
USP42-202ENST00000404008 RBM46Q8TBY0 533 aaKnown RBP35.41■■■■□ 3.26
USP42-202ENST00000404008 VEZTQ9HBM0 779 aa35.41■■■■□ 3.26
USP42-202ENST00000404008 DYNLL1P63167 89 aaKnown RBP35.4■■■■□ 3.26
USP42-202ENST00000404008 APPBP2Q92624 585 aa35.4■■■■□ 3.26
USP42-202ENST00000404008 RIOK1Q9BRS2 568 aaKnown RBP35.4■■■■□ 3.26
USP42-202ENST00000404008 CACNB3P54284 484 aa35.39■■■■□ 3.26
USP42-202ENST00000404008 BMP2KLQ5H9B9 411 aa35.39■■■■□ 3.26
USP42-202ENST00000404008 CERS3Q8IU89 383 aa35.39■■■■□ 3.26
USP42-202ENST00000404008 SH3RF3Q8TEJ3 882 aaPredicted RBP35.39■■■■□ 3.26
USP42-202ENST00000404008 TMOD2Q9NZR1 351 aa35.39■■■■□ 3.26
USP42-202ENST00000404008 MAGEB6P1A0A0J9YX57 407 aa35.38■■■■□ 3.26
USP42-202ENST00000404008 PLCG2P16885 1265 aa35.38■■■■□ 3.26
USP42-202ENST00000404008 SMC1BQ8NDV3 1235 aa35.38■■■■□ 3.26
USP42-202ENST00000404008 SCAF8Q9UPN6 1271 aaKnown RBP35.38■■■■□ 3.26
USP42-202ENST00000404008 ZMYM1Q5SVZ6 1142 aa35.38■■■■□ 3.25
USP42-202ENST00000404008 FKBP1CQ5VVH2 108 aa35.38■■■■□ 3.25
USP42-202ENST00000404008 SULF1Q8IWU6 871 aa35.38■■■■□ 3.25
USP42-202ENST00000404008 PUS7LQ9H0K6 701 aaKnown RBP35.38■■■■□ 3.25
USP42-202ENST00000404008 KRT26Q7Z3Y9 468 aa35.37■■■■□ 3.25
USP42-202ENST00000404008 OSBP2Q969R2 916 aa35.37■■■■□ 3.25
USP42-202ENST00000404008 TCP10L2B9ZVM9 353 aa35.36■■■■□ 3.25
USP42-202ENST00000404008 WDHD1O75717 1129 aaPredicted RBP35.36■■■■□ 3.25
USP42-202ENST00000404008 NFIAQ12857 509 aa35.36■■■■□ 3.25
USP42-202ENST00000404008 CDC37L1Q7L3B6 337 aa35.36■■■■□ 3.25
USP42-202ENST00000404008 TEX11Q8IYF3 940 aa35.36■■■■□ 3.25
USP42-202ENST00000404008 IDI2Q9BXS1 227 aa35.36■■■■□ 3.25
USP42-202ENST00000404008 GLIS2Q9BZE0 524 aaPredicted RBP35.36■■■■□ 3.25
USP42-202ENST00000404008 CNTNAP1P78357 1384 aa35.35■■■■□ 3.25
USP42-202ENST00000404008 ADM5C9JUS6 153 aa35.35■■■■□ 3.25
USP42-202ENST00000404008 TNFAIP1Q13829 316 aa35.35■■■■□ 3.25
USP42-202ENST00000404008 USP48Q86UV5 1035 aa35.35■■■■□ 3.25
USP42-202ENST00000404008 LCORLQ8N3X6 602 aa35.35■■■■□ 3.25
USP42-202ENST00000404008 MBD4O95243 580 aa35.34■■■■□ 3.25
USP42-202ENST00000404008 FAM198AQ9UFP1 575 aa35.34■■■■□ 3.25
USP42-202ENST00000404008 M0R2C6 588 aa35.33■■■■□ 3.25
USP42-202ENST00000404008 FAM83AQ86UY5 434 aa35.33■■■■□ 3.25
USP42-202ENST00000404008 AIDAQ96BJ3 306 aa35.33■■■■□ 3.25
USP42-202ENST00000404008 SEC62Q99442 399 aaKnown RBP35.33■■■■□ 3.25
USP42-202ENST00000404008 DEFB129Q9H1M3 183 aa35.33■■■■□ 3.25
USP42-202ENST00000404008 ARMT1Q9H993 441 aa35.33■■■■□ 3.25
USP42-202ENST00000404008 HIP1O00291 1037 aa35.32■■■■□ 3.24
USP42-202ENST00000404008 ITGBL1O95965 494 aaPredicted RBP35.32■■■■□ 3.24
USP42-202ENST00000404008 TNNI2P48788 182 aa35.32■■■■□ 3.24
USP42-202ENST00000404008 FAM227BQ96M60 508 aa35.32■■■■□ 3.24
USP42-202ENST00000404008 FSTL1Q12841 308 aa35.31■■■■□ 3.24
USP42-202ENST00000404008 NMIQ13287 307 aaPredicted RBP35.31■■■■□ 3.24
USP42-202ENST00000404008 RASA3Q14644 834 aa35.31■■■■□ 3.24
USP42-202ENST00000404008 NAV1Q8NEY1 1877 aa35.31■■■■□ 3.24
USP42-202ENST00000404008 DDX4Q9NQI0 724 aaKnown RBP35.31■■■■□ 3.24
USP42-202ENST00000404008 PPP2R3BQ9Y5P8 575 aa35.31■■■■□ 3.24
USP42-202ENST00000404008 A0A0D9SFI3 127 aa35.3■■■■□ 3.24
USP42-202ENST00000404008 NPM3O75607 178 aaKnown RBP35.3■■■■□ 3.24
USP42-202ENST00000404008 HELLSQ9NRZ9 838 aa35.3■■■■□ 3.24
USP42-202ENST00000404008 DIAPH3Q9NSV4 1193 aa35.3■■■■□ 3.24
USP42-202ENST00000404008 PICALMQ13492 652 aa35.29■■■■□ 3.24
USP42-202ENST00000404008 DLK2Q6UY11 383 aa35.29■■■■□ 3.24
USP42-202ENST00000404008 TGFBRAP1Q8WUH2 860 aa35.29■■■■□ 3.24
USP42-202ENST00000404008 CRNKL1Q9BZJ0 848 aaKnown RBP35.29■■■■□ 3.24
USP42-202ENST00000404008 TRPM7Q96QT4 1865 aa35.29■■■■□ 3.24
USP42-202ENST00000404008 DDX60LQ5H9U9 1706 aaKnown RBP35.29■■■■□ 3.24
USP42-202ENST00000404008 TRAF5O00463 557 aa35.28■■■■□ 3.24
USP42-202ENST00000404008 GPAA1O43292 621 aa35.28■■■■□ 3.24
USP42-202ENST00000404008 ENTPD3O75355 529 aa35.28■■■■□ 3.24
USP42-202ENST00000404008 TCP10Q12799 353 aa35.28■■■■□ 3.24
USP42-202ENST00000404008 FAM151AQ8WW52 585 aa35.28■■■■□ 3.24
USP42-202ENST00000404008 STRBPQ96SI9 672 aaKnown RBP35.28■■■■□ 3.24
USP42-202ENST00000404008 MYH1P12882 1939 aa35.28■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms