RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 SLC5A1P13866 664 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 PRDX5P30044 214 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 ADORA1P30542 326 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 INPP5BP32019 993 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 GTF2A2P52657 109 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 RRP1P56182 461 aaKnown RBP12.86□□□□□ -0.35
NEDD8-202ENST00000396828 CDC42EP5Q6NZY7 148 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 ZFPM1Q8IX07 1006 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 ERO1AQ96HE7 468 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 ARHGAP39Q9C0H5 1083 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 EFCC1Q9HA90 598 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 DAGLAQ9Y4D2 1042 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 CSADQ9Y600 493 aa12.86□□□□□ -0.35
NEDD8-202ENST00000396828 LRRFIP2Q9Y608 721 aaKnown RBP12.86□□□□□ -0.35
NEDD8-202ENST00000396828 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.86□□□□□ -0.35
NEDD8-202ENST00000396828 KIAA0100Q14667 2235 aaKnown RBP12.85□□□□□ -0.35
NEDD8-202ENST00000396828 SLURP2P0DP57 97 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 PHKA1P46020 1223 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 TCP10Q12799 353 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 TAF1CQ15572 869 aaPredicted RBP12.85□□□□□ -0.35
NEDD8-202ENST00000396828 PRPF38BQ5VTL8 546 aaKnown RBP12.85□□□□□ -0.35
NEDD8-202ENST00000396828 FKBP1CQ5VVH2 108 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 WDR66Q8TBY9 1149 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 MEIS3Q99687 375 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 FAM198AQ9UFP1 575 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 SUGT1Q9Y2Z0 365 aa12.85□□□□□ -0.35
NEDD8-202ENST00000396828 BTBD19C9JJ37 291 aa12.84□□□□□ -0.35
NEDD8-202ENST00000396828 BCAR3O75815 825 aa12.84□□□□□ -0.35
NEDD8-202ENST00000396828 ECM2O94769 699 aaPredicted RBP12.84□□□□□ -0.35
NEDD8-202ENST00000396828 UBTFL1P0CB47 393 aaPredicted RBP12.84□□□□□ -0.35
NEDD8-202ENST00000396828 EN2P19622 333 aaPredicted RBP12.84□□□□□ -0.35
NEDD8-202ENST00000396828 ATP2B3Q16720 1220 aa12.84□□□□□ -0.35
NEDD8-202ENST00000396828 ERO1BQ86YB8 467 aa12.84□□□□□ -0.35
NEDD8-202ENST00000396828 ARMC5Q96C12 935 aa12.84□□□□□ -0.35
NEDD8-202ENST00000396828 TMOD2Q9NZR1 351 aa12.84□□□□□ -0.35
NEDD8-202ENST00000396828 TNNQ9UQP3 1299 aa12.84□□□□□ -0.35
NEDD8-202ENST00000396828 CIAO1O76071 339 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 CTGFP29279 349 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 TIMM10P62072 90 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 FAM151AQ8WW52 585 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 FRAT1Q92837 279 aaPredicted RBP12.83□□□□□ -0.36
NEDD8-202ENST00000396828 ZFYVE28Q9HCC9 887 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 CEP126Q9P2H0 1117 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 PTCH2Q9Y6C5 1203 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 RBBP6Q7Z6E9 1792 aaKnown RBP12.83□□□□□ -0.36
NEDD8-202ENST00000396828 MAST3O60307 1309 aa12.83□□□□□ -0.36
NEDD8-202ENST00000396828 RPAP1Q9BWH6 1393 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-202ENST00000396828 AK9Q5TCS8 1911 aa12.82□□□□□ -0.36
NEDD8-202ENST00000396828 IPO8O15397 1037 aaKnown RBP12.82□□□□□ -0.36
NEDD8-202ENST00000396828 MYCP01106 439 aaPredicted RBP12.82□□□□□ -0.36
NEDD8-202ENST00000396828 PPIL2Q13356 520 aa12.82□□□□□ -0.36
NEDD8-202ENST00000396828 MOGSQ13724 837 aa12.82□□□□□ -0.36
NEDD8-202ENST00000396828 INTS3Q68E01 1043 aaKnown RBP12.82□□□□□ -0.36
NEDD8-202ENST00000396828 ZNF341Q9BYN7 854 aa12.82□□□□□ -0.36
NEDD8-202ENST00000396828 COPRSQ9NQ92 184 aa12.82□□□□□ -0.36
NEDD8-202ENST00000396828 USP40Q9NVE5 1235 aa12.82□□□□□ -0.36
NEDD8-202ENST00000396828 ZNF112Q9UJU3 913 aa12.82□□□□□ -0.36
NEDD8-202ENST00000396828 TLR2O60603 784 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 LDHBP07195 334 aaKnown RBP12.81□□□□□ -0.36
NEDD8-202ENST00000396828 CETPP11597 493 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 MS4A1P11836 297 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 IL15P40933 162 aaPredicted RBP12.81□□□□□ -0.36
NEDD8-202ENST00000396828 SNAPC2Q13487 334 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 ZKSCAN2Q63HK3 967 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 CCDC102BQ68D86 513 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 SH3BP5LQ7L8J4 393 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 ZNF333Q96JL9 665 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 FBXO3Q9UK99 471 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 MYH2Q9UKX2 1941 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 SZT2Q5T011 3432 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 ATRNL1Q5VV63 1379 aa12.81□□□□□ -0.36
NEDD8-202ENST00000396828 RANBP2P49792 3224 aaKnown RBP12.8□□□□□ -0.36
NEDD8-202ENST00000396828 PPATQ06203 517 aa12.8□□□□□ -0.36
NEDD8-202ENST00000396828 RASGRF1Q13972 1273 aa12.8□□□□□ -0.36
NEDD8-202ENST00000396828 DCAF15Q66K64 600 aa12.8□□□□□ -0.36
NEDD8-202ENST00000396828 C17orf99Q6UX52 265 aa12.8□□□□□ -0.36
NEDD8-202ENST00000396828 SH3TC2Q8TF17 1288 aa12.8□□□□□ -0.36
NEDD8-202ENST00000396828 API5Q9BZZ5 524 aaKnown RBP12.8□□□□□ -0.36
NEDD8-202ENST00000396828 CPA4Q9UI42 421 aa12.8□□□□□ -0.36
NEDD8-202ENST00000396828 SALL1Q9NSC2 1324 aa12.8□□□□□ -0.36
NEDD8-202ENST00000396828 PHF20L1A8MW92 1017 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 RGS3P49796 1198 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 LACTBP83111 547 aaPredicted RBP12.79□□□□□ -0.36
NEDD8-202ENST00000396828 TFCP2Q12800 502 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 ZNF384Q8TF68 577 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 ARHGAP45Q92619 1136 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 DDX4Q9NQI0 724 aaKnown RBP12.79□□□□□ -0.36
NEDD8-202ENST00000396828 GNL3LQ9NVN8 582 aaKnown RBP12.79□□□□□ -0.36
NEDD8-202ENST00000396828 DENND2AQ9ULE3 1009 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 KCNH4Q9UQ05 1017 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 GTF3C3Q9Y5Q9 886 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 ADGRA2Q96PE1 1338 aa12.79□□□□□ -0.36
NEDD8-202ENST00000396828 A0A1B0GUL7 405 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 DDTLA6NHG4 134 aaPredicted RBP12.78□□□□□ -0.36
NEDD8-202ENST00000396828 PDHXO00330 501 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 IRX6P78412 446 aaPredicted RBP12.78□□□□□ -0.36
NEDD8-202ENST00000396828 PDE3AQ14432 1141 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 SLC9C1Q4G0N8 1177 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 GPAT2Q6NUI2 795 aa12.78□□□□□ -0.36
NEDD8-202ENST00000396828 PI16Q6UXB8 463 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms