RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 NAPBQ9H115 298 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 CLSTN2Q9H4D0 955 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 DDX19AQ9NUU7 478 aaKnown RBP16.32■□□□□ 0.2
SNCA-204ENST00000394989 PNPLA7Q6ZV29 1317 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 AP5Z1O43299 807 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 SLC10A5Q5PT55 438 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 FBXO18Q8NFZ0 1043 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 TNMDQ9H2S6 317 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 ORC3Q9UBD5 711 aaPredicted RBP16.32■□□□□ 0.2
SNCA-204ENST00000394989 NARFQ9UHQ1 456 aa16.32■□□□□ 0.2
SNCA-204ENST00000394989 CCDC192P0DO97 292 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 APOA5Q6Q788 366 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 LY9Q9HBG7 655 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 ZSWIM5Q9P217 1185 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 MRVI1Q9Y6F6 885 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 CACNA1SQ13698 1873 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 CDC27P30260 824 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 RC3H1Q5TC82 1133 aaKnown RBP16.31■□□□□ 0.2
SNCA-204ENST00000394989 LRP2BPQ9P2M1 347 aa16.31■□□□□ 0.2
SNCA-204ENST00000394989 RGL2O15211 777 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 RPS6KA4O75676 772 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 C8orf76Q96K31 380 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 GOLPH3LQ9H4A5 285 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 ECM29Q5VYK3 1845 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 CPLX1O14810 134 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 KDM4AO75164 1064 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 TYRO3Q06418 890 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 UBE4AQ14139 1066 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 TMEM87BQ96K49 555 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 USP21Q9UK80 565 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 SLC4A4Q9Y6R1 1079 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 GNPATO15228 680 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 ATL3Q6DD88 541 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 SGMS1Q86VZ5 419 aa16.3■□□□□ 0.2
SNCA-204ENST00000394989 KIF28PB7ZC32 967 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 ADCY5O95622 1261 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 METAP2P50579 478 aaKnown RBP eCLIP16.29■□□□□ 0.2
SNCA-204ENST00000394989 AIFM3Q96NN9 605 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 TAF1LQ8IZX4 1826 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 KLRK1P26718 216 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 SNW1Q13573 536 aaKnown RBP16.29■□□□□ 0.2
SNCA-204ENST00000394989 AKNAD1Q5T1N1 836 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 CCDC24Q8N4L8 307 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 FAM84BQ96KN1 310 aaPredicted RBP16.29■□□□□ 0.2
SNCA-204ENST00000394989 ZNF396Q96N95 335 aaPredicted RBP16.29■□□□□ 0.2
SNCA-204ENST00000394989 FAM217BQ9NTX9 383 aaPredicted RBP16.29■□□□□ 0.2
SNCA-204ENST00000394989 ABCF2Q9UG63 623 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 PRDM4Q9UKN5 801 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 ZKSCAN5Q9Y2L8 839 aa16.29■□□□□ 0.2
SNCA-204ENST00000394989 PTMAP06454 111 aaKnown RBP16.28■□□□□ 0.2
SNCA-204ENST00000394989 NTRK3Q16288 839 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 MICU3Q86XE3 530 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 ZNF384Q8TF68 577 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 MYL10Q9BUA6 226 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 CCDC39Q9UFE4 941 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 LY75O60449 1722 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 POLR3DP05423 398 aaPredicted RBP16.28■□□□□ 0.2
SNCA-204ENST00000394989 GNAT2P19087 354 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 GTF2E1P29083 439 aaPredicted RBP16.28■□□□□ 0.2
SNCA-204ENST00000394989 CCDC144CPQ8IYA2 1237 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 CYP7A1P22680 504 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 CCAR1Q8IX12 1150 aaKnown RBP16.28■□□□□ 0.2
SNCA-204ENST00000394989 STAG1Q8WVM7 1258 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 PHKBQ93100 1093 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 SETDB2Q96T68 719 aa16.28■□□□□ 0.2
SNCA-204ENST00000394989 CCNL1Q9UK58 526 aaPredicted RBP16.28■□□□□ 0.2
SNCA-204ENST00000394989 SMIM22K7EJ46 135 aa16.27■□□□□ 0.2
SNCA-204ENST00000394989 TDO2P48775 406 aa16.27■□□□□ 0.2
SNCA-204ENST00000394989 TMEM67Q5HYA8 995 aa16.27■□□□□ 0.2
SNCA-204ENST00000394989 SDR42E1Q8WUS8 393 aa16.27■□□□□ 0.2
SNCA-204ENST00000394989 RTEL1Q9NZ71 1219 aa16.27■□□□□ 0.2
SNCA-204ENST00000394989 CLIC4Q9Y696 253 aa16.27■□□□□ 0.2
SNCA-204ENST00000394989 RANBP6O60518 1105 aaKnown RBP16.27■□□□□ 0.19
SNCA-204ENST00000394989 LIFRP42702 1097 aa16.27■□□□□ 0.19
SNCA-204ENST00000394989 ENGASEQ8NFI3 743 aa16.27■□□□□ 0.19
SNCA-204ENST00000394989 FAM200AQ8TCP9 573 aa16.27■□□□□ 0.19
SNCA-204ENST00000394989 RIOK1Q9BRS2 568 aaKnown RBP16.27■□□□□ 0.19
SNCA-204ENST00000394989 UBE2Q2LH0YL09 131 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 KIF23Q02241 960 aaPredicted RBP16.26■□□□□ 0.19
SNCA-204ENST00000394989 MFSD6Q6ZSS7 791 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 NBPF5PQ86XG9 351 aaPredicted RBP16.26■□□□□ 0.19
SNCA-204ENST00000394989 ARHGEF1Q92888 912 aaKnown RBP16.26■□□□□ 0.19
SNCA-204ENST00000394989 ZBTB43O43298 467 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 ANO6Q4KMQ2 910 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 STK11IPQ8N1F8 1099 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 LINC00301Q8NCQ3 95 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 NYXQ9GZU5 481 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 CNNM2Q9H8M5 875 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 PCDHA7Q9UN72 937 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 TNRC6CQ9HCJ0 1690 aaKnown RBP16.26■□□□□ 0.19
SNCA-204ENST00000394989 SBF2Q86WG5 1849 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 ZPR1O75312 459 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 ME1P48163 572 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 RPS8P62241 208 aaKnown RBP16.26■□□□□ 0.19
SNCA-204ENST00000394989 CAVIN4Q5BKX8 364 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 MYSM1Q5VVJ2 828 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 LUZP1Q86V48 1076 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 ZKSCAN3Q9BRR0 538 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 NACAP1Q9BZK3 213 aa16.26■□□□□ 0.19
SNCA-204ENST00000394989 GNL3LQ9NVN8 582 aaKnown RBP16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms