RNA–Protein interactions for RNA: ENST00000394609.6

RTN4-205, Transcript of reticulon 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN4, Length 1,898 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-205ENST00000394609 ANKLE1Q8NAG6 615 aa8.32□□□□□ -1.08
RTN4-205ENST00000394609 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.32□□□□□ -1.08
RTN4-205ENST00000394609 UPF3BQ9BZI7 483 aaKnown RBP8.32□□□□□ -1.08
RTN4-205ENST00000394609 BSDC1Q9NW68 430 aaPredicted RBP8.32□□□□□ -1.08
RTN4-205ENST00000394609 MINPP1Q9UNW1 487 aa8.32□□□□□ -1.08
RTN4-205ENST00000394609 BCORQ6W2J9 1755 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 CCDC171Q6TFL3 1326 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 RNF223E7ERA6 249 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 K7ELQ4 463 aaPredicted RBP8.31□□□□□ -1.08
RTN4-205ENST00000394609 TM4SF1P30408 202 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 DDR1Q08345 913 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 SLC51AQ86UW1 340 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 SNX14Q9Y5W7 946 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 COL4A1P02462 1669 aa8.31□□□□□ -1.08
RTN4-205ENST00000394609 TAF1LQ8IZX4 1826 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 GOLGA6L3A6NEY3 463 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 RNF113AO15541 343 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 EPB41L2O43491 1005 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 CYP2E1P05181 493 aaPredicted RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 PTMSP20962 102 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 MRE11P49959 708 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 ANAPC15P60006 121 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 MCMDC2Q4G0Z9 681 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 MAP4K1Q92918 833 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 RRAGDQ9NQL2 400 aaPredicted RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 HMG20BQ9P0W2 317 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 IQSEC3Q9UPP2 1182 aaPredicted RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 RBM8AQ9Y5S9 174 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 SCN7AQ01118 1682 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 DDX60Q8IY21 1712 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 MED23Q9ULK4 1368 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 HSP90AA1P07900 732 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 CPA1P15085 419 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 GYG1P46976 350 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 RASGRF1Q13972 1273 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 NECTIN1Q15223 517 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 EZH2Q15910 746 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 WASHC4Q2M389 1173 aa8.3□□□□□ -1.08
RTN4-205ENST00000394609 NOL8Q76FK4 1167 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 ZNF512BQ96KM6 892 aaPredicted RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 PIH1D3Q9NQM4 214 aaKnown RBP8.3□□□□□ -1.08
RTN4-205ENST00000394609 POLRMTO00411 1230 aaKnown RBP8.29□□□□□ -1.08
RTN4-205ENST00000394609 IDH1O75874 414 aaKnown RBP8.29□□□□□ -1.08
RTN4-205ENST00000394609 ADH1BP00325 375 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 UQCRFS1P1P0C7P4 283 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 KLRK1P26718 216 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 ARID4AP29374 1257 aaPredicted RBP8.29□□□□□ -1.08
RTN4-205ENST00000394609 ST5P78524 1137 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 ADCK5Q3MIX3 580 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 ZMYM1Q5SVZ6 1142 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 VPS53Q5VIR6 699 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 CREB3L3Q68CJ9 461 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 MSL1Q68DK7 614 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 SPATA5Q8NB90 893 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 OSBP2Q969R2 916 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 TAF6LQ9Y6J9 622 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 MYH3P11055 1940 aa8.29□□□□□ -1.08
RTN4-205ENST00000394609 M0R2C6 588 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 SLC27A2O14975 620 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 TPM2P07951 284 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 ZKSCAN1P17029 563 aaPredicted RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 HMGB2P26583 209 aaKnown RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 HSP90AA2PQ14568 343 aaPredicted RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 SLC9C2Q5TAH2 1124 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 ZNF787Q6DD87 383 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 ZNF598Q86UK7 904 aaKnown RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 NLGN1Q8N2Q7 840 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 RPGRQ92834 1020 aaKnown RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 HELLSQ9NRZ9 838 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 LRP5O75197 1615 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 RFX7Q2KHR2 1363 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 C4AP0C0L4 1744 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 MAST3O60307 1309 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 PNPLA7Q6ZV29 1317 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 TLL1O43897 1013 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 CASTP20810 708 aaKnown RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 TERF1P54274 439 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 GRAPQ13588 217 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 COL9A3Q14050 684 aaPredicted RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 UBE4AQ14139 1066 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 SMYD5Q6GMV2 418 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 VPS37DQ86XT2 251 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 GRAPLQ8TC17 118 aaPredicted RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 JAKMIP1Q96N16 626 aaKnown RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 PUS7LQ9H0K6 701 aaKnown RBP8.28□□□□□ -1.08
RTN4-205ENST00000394609 ANKIB1Q9P2G1 1089 aa8.28□□□□□ -1.08
RTN4-205ENST00000394609 AK9Q5TCS8 1911 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 DDX11L8A8MPP1 907 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 DGAT1O75907 488 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 ZFYP08048 801 aaPredicted RBP8.27□□□□□ -1.09
RTN4-205ENST00000394609 MMP10P09238 476 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 XRCC6P12956 609 aaKnown RBP eCLIP8.27□□□□□ -1.09
RTN4-205ENST00000394609 PRR20EP86478 221 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 PRR20CP86479 221 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 PRR20DP86480 221 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 PRR20BP86481 221 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 PRR20AP86496 221 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 HIC1Q14526 733 aa8.27□□□□□ -1.09
RTN4-205ENST00000394609 TTF1Q15361 905 aaPredicted RBP8.27□□□□□ -1.09
RTN4-205ENST00000394609 LRRFIP1Q32MZ4 808 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms