RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 BTDP43251 543 aa16.81■□□□□ 0.28
TPM3-211ENST00000368531 ANGEL2Q5VTE6 544 aaKnown RBP16.81■□□□□ 0.28
TPM3-211ENST00000368531 APOBEC3HQ6NTF7 200 aaKnown RBP16.81■□□□□ 0.28
TPM3-211ENST00000368531 MIGA1Q8NAN2 632 aa16.81■□□□□ 0.28
TPM3-211ENST00000368531 MTMR14Q8NCE2 650 aa16.81■□□□□ 0.28
TPM3-211ENST00000368531 ZBED3Q96IU2 234 aaPredicted RBP16.81■□□□□ 0.28
TPM3-211ENST00000368531 VEZTQ9HBM0 779 aa16.81■□□□□ 0.28
TPM3-211ENST00000368531 AATFQ9NY61 560 aaKnown RBP eCLIP16.81■□□□□ 0.28
TPM3-211ENST00000368531 GGA3Q9NZ52 723 aa16.81■□□□□ 0.28
TPM3-211ENST00000368531 GAKO14976 1311 aa16.8■□□□□ 0.28
TPM3-211ENST00000368531 CACNB3P54284 484 aa16.8■□□□□ 0.28
TPM3-211ENST00000368531 DYNLL1P63167 89 aaKnown RBP16.8■□□□□ 0.28
TPM3-211ENST00000368531 MAP1SQ66K74 1059 aaPredicted RBP16.8■□□□□ 0.28
TPM3-211ENST00000368531 ZSCAN25Q6NSZ9 544 aa16.8■□□□□ 0.28
TPM3-211ENST00000368531 LDHDQ86WU2 507 aa16.8■□□□□ 0.28
TPM3-211ENST00000368531 DCPSQ96C86 337 aaKnown RBP16.8■□□□□ 0.28
TPM3-211ENST00000368531 FAM163AQ96GL9 167 aaPredicted RBP16.8■□□□□ 0.28
TPM3-211ENST00000368531 USP40Q9NVE5 1235 aa16.8■□□□□ 0.28
TPM3-211ENST00000368531 ZNF70Q9UC06 446 aaPredicted RBP16.8■□□□□ 0.28
TPM3-211ENST00000368531 GPR75-ASB3A0A0A6YYF3 556 aa16.79■□□□□ 0.28
TPM3-211ENST00000368531 RNF113AO15541 343 aaKnown RBP16.79■□□□□ 0.28
TPM3-211ENST00000368531 SDSP20132 328 aa16.79■□□□□ 0.28
TPM3-211ENST00000368531 CDC42EP5Q6NZY7 148 aa16.79■□□□□ 0.28
TPM3-211ENST00000368531 TCRBV5S4A2TA0A5A2 114 aa16.78■□□□□ 0.28
TPM3-211ENST00000368531 TCP10L2B9ZVM9 353 aa16.78■□□□□ 0.28
TPM3-211ENST00000368531 BAG3O95817 575 aa16.78■□□□□ 0.28
TPM3-211ENST00000368531 LRRFIP1Q32MZ4 808 aaKnown RBP16.78■□□□□ 0.28
TPM3-211ENST00000368531 SPDYE2Q495Y8 402 aa16.78■□□□□ 0.28
TPM3-211ENST00000368531 TMOD2Q9NZR1 351 aa16.78■□□□□ 0.28
TPM3-211ENST00000368531 MAGEB6P1A0A0J9YX57 407 aa16.77■□□□□ 0.28
TPM3-211ENST00000368531 ZFYP08048 801 aaPredicted RBP16.77■□□□□ 0.28
TPM3-211ENST00000368531 UBE3CQ15386 1083 aa16.77■□□□□ 0.28
TPM3-211ENST00000368531 CHADLQ6NUI6 762 aa16.77■□□□□ 0.28
TPM3-211ENST00000368531 DLK2Q6UY11 383 aa16.77■□□□□ 0.28
TPM3-211ENST00000368531 USP48Q86UV5 1035 aa16.77■□□□□ 0.28
TPM3-211ENST00000368531 SH3RF3Q8TEJ3 882 aaPredicted RBP16.77■□□□□ 0.28
TPM3-211ENST00000368531 ZC3H15Q8WU90 426 aaKnown RBP16.77■□□□□ 0.28
TPM3-211ENST00000368531 CDK5RAP2Q96SN8 1893 aa16.77■□□□□ 0.27
TPM3-211ENST00000368531 ADM5C9JUS6 153 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 IGSF3O75054 1194 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 TOMM70O94826 608 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 TCP10Q12799 353 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 KRT26Q7Z3Y9 468 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 SULF1Q8IWU6 871 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 APPBP2Q92624 585 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 SEC62Q99442 399 aaKnown RBP16.76■□□□□ 0.27
TPM3-211ENST00000368531 GLIS2Q9BZE0 524 aaPredicted RBP16.76■□□□□ 0.27
TPM3-211ENST00000368531 PUS7LQ9H0K6 701 aaKnown RBP16.76■□□□□ 0.27
TPM3-211ENST00000368531 ARMT1Q9H993 441 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 PGAP2Q9UHJ9 254 aa16.76■□□□□ 0.27
TPM3-211ENST00000368531 MBD4O95243 580 aa16.75■□□□□ 0.27
TPM3-211ENST00000368531 RHBDL3P58872 404 aa16.75■□□□□ 0.27
TPM3-211ENST00000368531 PPP4CP60510 307 aa16.75■□□□□ 0.27
TPM3-211ENST00000368531 PICALMQ13492 652 aa16.75■□□□□ 0.27
TPM3-211ENST00000368531 PRAMEF18Q5VWM3 479 aa16.75■□□□□ 0.27
TPM3-211ENST00000368531 APOBEC3FQ8IUX4 373 aaKnown RBP16.75■□□□□ 0.27
TPM3-211ENST00000368531 TEX11Q8IYF3 940 aa16.75■□□□□ 0.27
TPM3-211ENST00000368531 OSBP2Q969R2 916 aa16.75■□□□□ 0.27
TPM3-211ENST00000368531 M0R2C6 588 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 TRAF5O00463 557 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 PLCG2P16885 1265 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 FMR1Q06787 632 aaKnown RBP eCLIP16.74■□□□□ 0.27
TPM3-211ENST00000368531 NFIAQ12857 509 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 NMIQ13287 307 aaPredicted RBP16.74■□□□□ 0.27
TPM3-211ENST00000368531 ZMYM1Q5SVZ6 1142 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 LCORLQ8N3X6 602 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 SMC1BQ8NDV3 1235 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 AIDAQ96BJ3 306 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 FAM227BQ96M60 508 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 DIAPH3Q9NSV4 1193 aa16.74■□□□□ 0.27
TPM3-211ENST00000368531 PITPNM2Q9BZ72 1349 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 USP5P45974 858 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 TNNI2P48788 182 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 RASA3Q14644 834 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 BMP2KLQ5H9B9 411 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 TMED8Q6PL24 325 aaPredicted RBP16.73■□□□□ 0.27
TPM3-211ENST00000368531 CCDC129Q6ZRS4 1044 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 CDC37L1Q7L3B6 337 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 RBM46Q8TBY0 533 aaKnown RBP16.73■□□□□ 0.27
TPM3-211ENST00000368531 TGFBRAP1Q8WUH2 860 aa16.73■□□□□ 0.27
TPM3-211ENST00000368531 RIOK1Q9BRS2 568 aaKnown RBP16.73■□□□□ 0.27
TPM3-211ENST00000368531 A0A0D9SFI3 127 aa16.72■□□□□ 0.27
TPM3-211ENST00000368531 WDHD1O75717 1129 aaPredicted RBP16.72■□□□□ 0.27
TPM3-211ENST00000368531 CWC27Q6UX04 472 aaKnown RBP16.72■□□□□ 0.27
TPM3-211ENST00000368531 MAPKAPK5Q8IW41 473 aa16.72■□□□□ 0.27
TPM3-211ENST00000368531 ZFPM1Q8IX07 1006 aa16.72■□□□□ 0.27
TPM3-211ENST00000368531 DEFB129Q9H1M3 183 aa16.72■□□□□ 0.27
TPM3-211ENST00000368531 DDX4Q9NQI0 724 aaKnown RBP16.72■□□□□ 0.27
TPM3-211ENST00000368531 FAM198AQ9UFP1 575 aa16.72■□□□□ 0.27
TPM3-211ENST00000368531 FOCADQ5VW36 1801 aa16.72■□□□□ 0.27
TPM3-211ENST00000368531 MYH1P12882 1939 aa16.71■□□□□ 0.27
TPM3-211ENST00000368531 GPAA1O43292 621 aa16.71■□□□□ 0.27
TPM3-211ENST00000368531 PRKAB2O43741 272 aa16.71■□□□□ 0.27
TPM3-211ENST00000368531 TNFAIP1Q13829 316 aa16.71■□□□□ 0.27
TPM3-211ENST00000368531 ZSCAN29Q8IWY8 852 aaPredicted RBP16.71■□□□□ 0.27
TPM3-211ENST00000368531 SDR42E1Q8WUS8 393 aa16.71■□□□□ 0.27
TPM3-211ENST00000368531 CRNKL1Q9BZJ0 848 aaKnown RBP16.71■□□□□ 0.27
TPM3-211ENST00000368531 TMEM39BQ9GZU3 492 aa16.71■□□□□ 0.27
TPM3-211ENST00000368531 ZNF408Q9H9D4 720 aa16.71■□□□□ 0.27
TPM3-211ENST00000368531 RNF216Q9NWF9 866 aaPredicted RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms