RNA–Protein interactions for RNA: ENST00000346495.6

TSPAN3-202, Transcript of tetraspanin 3, humanhuman

TSL 2 BASIC

Gene TSPAN3, Length 1,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-202ENST00000346495 RTFDC1Q9BY42 306 aaPredicted RBP25.38■■□□□ 1.65
TSPAN3-202ENST00000346495 MYH2Q9UKX2 1941 aa25.38■■□□□ 1.65
TSPAN3-202ENST00000346495 MFSD14BQ5SR56 506 aa25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 LRRC2Q9BYS8 371 aa25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 GTF2IP78347 998 aa25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 GRIK5Q16478 980 aa25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 SLF2Q8IX21 1173 aa25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 NOL10Q9BSC4 688 aaKnown RBP25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 CNNM2Q9H8M5 875 aa25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 SMC3Q9UQE7 1217 aa25.37■■□□□ 1.65
TSPAN3-202ENST00000346495 PRC1O43663 620 aa25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 BAG3O95817 575 aa25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 GRIPAP1Q4V328 841 aa25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 CERS3Q8IU89 383 aa25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 TNPO1Q92973 898 aaKnown RBP25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 MTFR1LQ9H019 292 aa25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 ATP8A2Q9NTI2 1148 aa25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 SUGT1Q9Y2Z0 365 aa25.36■■□□□ 1.65
TSPAN3-202ENST00000346495 MROH7-TTC4A0A0A0MT08 1334 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 ST3GAL1Q11201 340 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 AKNAD1Q5T1N1 836 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 TTLL6Q8N841 843 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 NECAB1Q8N987 351 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 SUPT20HQ8NEM7 779 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 STAG1Q8WVM7 1258 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 ZNF219Q9P2Y4 722 aaPredicted RBP25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 ANAPC4Q9UJX5 808 aa25.35■■□□□ 1.65
TSPAN3-202ENST00000346495 BAZ2AQ9UIF9 1905 aaKnown RBP25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 ZBTB7AO95365 584 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 POLD1P28340 1107 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 PPP4CP60510 307 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 CTDSPL2Q05D32 466 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 PPARAQ07869 468 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 DOK7Q18PE1 504 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 CHST3Q7LGC8 479 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 KRT23Q9C075 422 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 RNF41Q9H4P4 317 aaPredicted RBP25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 SNED1Q8TER0 1413 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 MFSD6Q6ZSS7 791 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 PODNQ7Z5L7 613 aa25.34■■□□□ 1.65
TSPAN3-202ENST00000346495 ANTXR2P58335 489 aa25.33■■□□□ 1.65
TSPAN3-202ENST00000346495 DIXDC1Q155Q3 683 aa25.33■■□□□ 1.65
TSPAN3-202ENST00000346495 GTF3C6Q969F1 213 aa25.33■■□□□ 1.65
TSPAN3-202ENST00000346495 FAM163AQ96GL9 167 aaPredicted RBP25.33■■□□□ 1.65
TSPAN3-202ENST00000346495 GBP4Q96PP9 640 aa25.33■■□□□ 1.65
TSPAN3-202ENST00000346495 NEDD4P46934 1319 aa25.32■■□□□ 1.64
TSPAN3-202ENST00000346495 LAMB1P07942 1786 aa25.32■■□□□ 1.64
TSPAN3-202ENST00000346495 DPEP1P16444 411 aa25.32■■□□□ 1.64
TSPAN3-202ENST00000346495 APOBRQ0VD83 1088 aa25.32■■□□□ 1.64
TSPAN3-202ENST00000346495 FBXW7Q969H0 707 aa25.32■■□□□ 1.64
TSPAN3-202ENST00000346495 ZNF274Q96GC6 653 aaPredicted RBP25.32■■□□□ 1.64
TSPAN3-202ENST00000346495 MINDY4BA8MYZ0 360 aa25.31■■□□□ 1.64
TSPAN3-202ENST00000346495 B4E1Z4 1266 aa25.31■■□□□ 1.64
TSPAN3-202ENST00000346495 PFKFB2O60825 505 aa25.31■■□□□ 1.64
TSPAN3-202ENST00000346495 EVCP57679 992 aa25.31■■□□□ 1.64
TSPAN3-202ENST00000346495 STK3Q13188 491 aa25.31■■□□□ 1.64
TSPAN3-202ENST00000346495 UPF1Q92900 1129 aaKnown RBP eCLIP25.31■■□□□ 1.641e-6■■■□□ 17.8
TSPAN3-202ENST00000346495 CHMP4CQ96CF2 233 aa25.31■■□□□ 1.64
TSPAN3-202ENST00000346495 DCP1AQ9NPI6 582 aaPredicted RBP25.31■■□□□ 1.64
TSPAN3-202ENST00000346495 C21orf2O43822 256 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 KCNA3P22001 575 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 TGFB2P61812 414 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 PKP1Q13835 747 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 TMEM87BQ96K49 555 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 ATF5Q9Y2D1 282 aaPredicted RBP25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 GPR75-ASB3A0A0A6YYF3 556 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 PCP11498 1178 aaKnown RBP25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 PLCG2P16885 1265 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 GJB2P29033 226 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 CCDC93Q567U6 631 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 CTR9Q6PD62 1173 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 CYB5R4Q7L1T6 521 aa25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 ARPP21Q9UBL0 812 aaPredicted RBP25.3■■□□□ 1.64
TSPAN3-202ENST00000346495 GAKO14976 1311 aa25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 MCM4P33991 863 aa25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 R3HDM1Q15032 1099 aaKnown RBP25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 SBK1Q52WX2 424 aa25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 CLEC17AQ6ZS10 378 aa25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 RTKN2Q8IZC4 609 aa25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 SH3RF3Q8TEJ3 882 aaPredicted RBP25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 DBNDD1Q9H9R9 158 aa25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 ZDHHC9Q9Y397 364 aa25.29■■□□□ 1.64
TSPAN3-202ENST00000346495 BRD1O95696 1058 aa25.28■■□□□ 1.64
TSPAN3-202ENST00000346495 BTDP43251 543 aa25.28■■□□□ 1.64
TSPAN3-202ENST00000346495 USP5P45974 858 aa25.28■■□□□ 1.64
TSPAN3-202ENST00000346495 KIAA2012Q0VF49 1180 aa25.28■■□□□ 1.64
TSPAN3-202ENST00000346495 TACC3Q9Y6A5 838 aa25.28■■□□□ 1.64
TSPAN3-202ENST00000346495 USP17L12C9JPN9 530 aa25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 USP17L21D6R901 530 aa25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 PDIA3P30101 505 aaKnown RBP25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 FKBP1AP62942 108 aaKnown RBP25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 LLPHQ9BRT6 129 aaKnown RBP25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 INCENPQ9NQS7 918 aa25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 ANGEL1Q9UNK9 670 aaKnown RBP25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 WDR33Q9C0J8 1336 aaKnown RBP25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 NAV1Q8NEY1 1877 aa25.27■■□□□ 1.64
TSPAN3-202ENST00000346495 SH2B2O14492 632 aaPredicted RBP25.26■■□□□ 1.63
TSPAN3-202ENST00000346495 ECE2O60344 883 aa25.26■■□□□ 1.63
TSPAN3-202ENST00000346495 KDM4AO75164 1064 aa25.26■■□□□ 1.63
TSPAN3-202ENST00000346495 PDIA4P13667 645 aaKnown RBP25.26■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms