RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 TBC1D10CQ8IV04 446 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 IFNL3Q8IZI9 196 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 WDR66Q8TBY9 1149 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 SLC16A10Q8TF71 515 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 C7orf43Q8WVR3 580 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 INCENPQ9NQS7 918 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 CTNNA3Q9UI47 895 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 TPCN1Q9ULQ1 816 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 TACC3Q9Y6A5 838 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 SALL1Q9NSC2 1324 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 PATL2C9JE40 543 aaKnown RBP4.92□□□□□ -1.62
MCF2-201ENST00000338585 ZNF213O14771 459 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 C21orf2O43822 256 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 LDHBP07195 334 aaKnown RBP4.92□□□□□ -1.62
MCF2-201ENST00000338585 DPEP1P16444 411 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 KCNA3P22001 575 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 GTF2IP78347 998 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 CTDSPL2Q05D32 466 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 CUL4AQ13619 759 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 PKP1Q13835 747 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 ME3Q16798 604 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 DZIP1Q86YF9 867 aaKnown RBP4.92□□□□□ -1.62
MCF2-201ENST00000338585 STK11IPQ8N1F8 1099 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 NECAB1Q8N987 351 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 SLC39A7Q92504 469 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 CNKSR1Q969H4 720 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 MXD3Q9BW11 206 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 ZC3H12CQ9C0D7 883 aaKnown RBP4.92□□□□□ -1.62
MCF2-201ENST00000338585 GPHNQ9NQX3 736 aaPredicted RBP4.92□□□□□ -1.62
MCF2-201ENST00000338585 AATFQ9NY61 560 aaKnown RBP eCLIP4.92□□□□□ -1.62
MCF2-201ENST00000338585 CHMP5Q9NZZ3 219 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 LIMCH1Q9UPQ0 1083 aa4.92□□□□□ -1.62
MCF2-201ENST00000338585 C7P10643 843 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 TDO2P48775 406 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 EXOSC10Q01780 885 aaKnown RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 MFSD14BQ5SR56 506 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 Q6ZUG5 572 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 FBXW7Q969H0 707 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 COA1Q9GZY4 146 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 NAPBQ9H115 298 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 DBNDD1Q9H9R9 158 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 KCNQ5Q9NR82 932 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 MAST2Q6P0Q8 1798 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 SNED1Q8TER0 1413 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 GOLGB1Q14789 3259 aaKnown RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 NEDD4P46934 1319 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 CYP2D7A0A087X1C5 515 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 ANTXR2P58335 489 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 STK3Q13188 491 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 ALX1Q15699 326 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 TPRNQ4KMQ1 711 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 SPTY2D1Q68D10 685 aaPredicted RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 CHADLQ6NUI6 762 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 DHX32Q7L7V1 743 aaKnown RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 CCDC83Q8IWF9 413 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 CERS5Q8N5B7 392 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 BRF1Q92994 677 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 MTFR1LQ9H019 292 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 TMX4Q9H1E5 349 aaPredicted RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 CCDC88AQ3V6T2 1871 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 F8W031 263 aaPredicted RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 GNAT2P19087 354 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 NFKBIBQ15653 356 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 AOC3Q16853 763 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 SLC4A8Q2Y0W8 1093 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 MB21D2Q8IYB1 491 aaPredicted RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 SH3RF3Q8TEJ3 882 aaPredicted RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 PPP1R1BQ9UD71 204 aaPredicted RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 BAZ2AQ9UIF9 1905 aaKnown RBP4.91□□□□□ -1.62
MCF2-201ENST00000338585 DLEC1Q9Y238 1755 aa4.91□□□□□ -1.62
MCF2-201ENST00000338585 ZMYM6O95789 1325 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 FAM205AQ6ZU69 1335 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 MINDY4BA8MYZ0 360 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 B4E1Z4 1266 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 G3V3G9 751 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 PRC1O43663 620 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 HMGB1P09429 215 aaKnown RBP4.9□□□□□ -1.62
MCF2-201ENST00000338585 CYP2D6P10635 497 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 FGD1P98174 961 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 APOBRQ0VD83 1088 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 DCAF8Q5TAQ9 597 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 CYB5R4Q7L1T6 521 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 RALYLQ86SE5 291 aaKnown RBP4.9□□□□□ -1.62
MCF2-201ENST00000338585 KLHL34Q8N239 644 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 TTLL6Q8N841 843 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 NCOA7Q8NI08 942 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 INTS4Q96HW7 963 aaKnown RBP4.9□□□□□ -1.62
MCF2-201ENST00000338585 EYA3Q99504 573 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 RTFDC1Q9BY42 306 aaPredicted RBP4.9□□□□□ -1.62
MCF2-201ENST00000338585 NACAP1Q9BZK3 213 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 ALDH8A1Q9H2A2 487 aaPredicted RBP4.9□□□□□ -1.62
MCF2-201ENST00000338585 CIZ1Q9ULV3 898 aaPredicted RBP4.9□□□□□ -1.62
MCF2-201ENST00000338585 ZDHHC9Q9Y397 364 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 SCN9AQ15858 1988 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 KIAA1551Q9HCM1 1747 aa4.9□□□□□ -1.62
MCF2-201ENST00000338585 MROH7-TTC4A0A0A0MT08 1334 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 USP17L12C9JPN9 530 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 USP17L21D6R901 530 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 ECE2O60344 883 aa4.9□□□□□ -1.63
MCF2-201ENST00000338585 PRR29P0C7W0 189 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms