RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 CCDC191Q8NCU4 936 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 ANO2Q9NQ90 1003 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 PKN1Q16512 942 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 SHC4Q6S5L8 630 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 LRRC8AQ8IWT6 810 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 REXO1L1PQ8IX06 675 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 RASSF10A6NK89 507 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 LETM1O95202 739 aaPredicted RBP9.3□□□□□ -0.92
CNOT4-201ENST00000315544 MCMDC2Q4G0Z9 681 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 ANKRD13DQ6ZTN6 518 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 ADGRA1Q86SQ6 560 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 CCDC83Q8IWF9 413 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 FAM200AQ8TCP9 573 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 STK31Q9BXU1 1019 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 LY9Q9HBG7 655 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 CCDC87Q9NVE4 849 aa9.3□□□□□ -0.92
CNOT4-201ENST00000315544 A0A087X0B3 334 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 SLC4A10Q6U841 1118 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 ARHGEF1Q92888 912 aaKnown RBP9.29□□□□□ -0.92
CNOT4-201ENST00000315544 USP28Q96RU2 1077 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 TMOD3Q9NYL9 352 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 CCDC39Q9UFE4 941 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 PLXNB2O15031 1838 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 DOCK1Q14185 1865 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 PCCAP05165 728 aaPredicted RBP9.29□□□□□ -0.92
CNOT4-201ENST00000315544 ZNF236Q9UL36 1845 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 NTSR2O95665 410 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 TTLL11Q8NHH1 800 aa9.29□□□□□ -0.92
CNOT4-201ENST00000315544 TTC12Q9H892 705 aaPredicted RBP9.29□□□□□ -0.92
CNOT4-201ENST00000315544 CCNL1Q9UK58 526 aaPredicted RBP9.29□□□□□ -0.92
CNOT4-201ENST00000315544 ADORA1P30542 326 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 ADD2P35612 726 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 DMTNQ08495 405 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 E2F4Q16254 413 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 VPS33BQ9H267 617 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 IL17AQ16552 155 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 METTL16Q86W50 562 aaKnown RBP9.28□□□□□ -0.92
CNOT4-201ENST00000315544 NECTIN2Q92692 538 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 AK7Q96M32 723 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 JAKMIP1Q96N16 626 aaKnown RBP9.28□□□□□ -0.92
CNOT4-201ENST00000315544 PCDHA7Q9UN72 937 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 ZSWIM8A7E2V4 1837 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 SLFN14P0C7P3 912 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 KIF23Q02241 960 aaPredicted RBP9.28□□□□□ -0.92
CNOT4-201ENST00000315544 LRMPQ12912 555 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 RESP18Q5W5W9 173 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 TIGD1Q96MW7 591 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 MTA3Q9BTC8 594 aa9.28□□□□□ -0.92
CNOT4-201ENST00000315544 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.28□□□□□ -0.92
CNOT4-201ENST00000315544 SMIM22K7EJ46 135 aa9.27□□□□□ -0.92
CNOT4-201ENST00000315544 DHX32Q7L7V1 743 aaKnown RBP9.27□□□□□ -0.92
CNOT4-201ENST00000315544 AACSQ86V21 672 aa9.27□□□□□ -0.92
CNOT4-201ENST00000315544 CCDC8Q9H0W5 538 aaPredicted RBP9.27□□□□□ -0.92
CNOT4-201ENST00000315544 CENPFP49454 3210 aa9.27□□□□□ -0.92
CNOT4-201ENST00000315544 HIP1O00291 1037 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 RCAN1P53805 252 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.27□□□□□ -0.93
CNOT4-201ENST00000315544 LUZP1Q86V48 1076 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 MSL3Q8N5Y2 521 aaKnown RBP9.27□□□□□ -0.93
CNOT4-201ENST00000315544 EYA2O00167 538 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 HLFQ16534 295 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 ADALQ6DHV7 355 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 Q6ZUG5 572 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 SMAP1Q8IYB5 467 aaPredicted RBP9.27□□□□□ -0.93
CNOT4-201ENST00000315544 SYNE4Q8N205 404 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 ZNF830Q96NB3 372 aaPredicted RBP9.27□□□□□ -0.93
CNOT4-201ENST00000315544 FHOD1Q9Y613 1164 aa9.27□□□□□ -0.93
CNOT4-201ENST00000315544 PDE4BQ07343 736 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 CUL4BQ13620 913 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 DDX41Q9UJV9 622 aaKnown RBP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 LRRC10BA6NIK2 292 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 TCIRG1Q13488 830 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 STYK1Q6J9G0 422 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 ZBTB38Q8NAP3 1195 aaPredicted RBP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 FBXO18Q8NFZ0 1043 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 RIOK1Q9BRS2 568 aaKnown RBP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 PIH1D3Q9NQM4 214 aaKnown RBP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 ACTN4O43707 911 aaKnown RBP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 RSRC2Q7L4I2 434 aaKnown RBP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 NLRP10Q86W26 655 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 CCDC94Q9BW85 323 aaPredicted RBP9.26□□□□□ -0.93
CNOT4-201ENST00000315544 STK32BQ9NY57 414 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 CYP46A1Q9Y6A2 500 aa9.26□□□□□ -0.93
CNOT4-201ENST00000315544 COL2A1P02458 1487 aaPredicted RBP9.25□□□□□ -0.93
CNOT4-201ENST00000315544 SMCHD1A6NHR9 2005 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 EARS2Q5JPH6 523 aaKnown RBP9.25□□□□□ -0.93
CNOT4-201ENST00000315544 TTLL5Q6EMB2 1281 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 C15orf52Q6ZUT6 534 aaKnown RBP9.25□□□□□ -0.93
CNOT4-201ENST00000315544 TSC1Q92574 1164 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 FMNL2Q96PY5 1086 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 ZSCAN16Q9H4T2 348 aaPredicted RBP9.25□□□□□ -0.93
CNOT4-201ENST00000315544 CLIC4Q9Y696 253 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 A0A087WZG4 1122 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 FGAP02671 866 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 CDKAL1Q5VV42 579 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 BRAPQ7Z569 592 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 DACT1Q9NYF0 836 aa9.25□□□□□ -0.93
CNOT4-201ENST00000315544 FBXO2Q9UK22 296 aaPredicted RBP9.25□□□□□ -0.93
CNOT4-201ENST00000315544 DPYDQ12882 1025 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms