RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 OSBPL3Q9H4L5 887 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 ATP5JP18859 108 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 CYP2C19P33261 490 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 ANAPC15P60006 121 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 CCDC73Q6ZRK6 1079 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 MYCBPQ99417 103 aaPredicted RBP12.58□□□□□ -0.4
LSM3-201ENST00000306024 UFL1O94874 794 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 ATG9AQ7Z3C6 839 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 DDX19AQ9NUU7 478 aaKnown RBP12.58□□□□□ -0.4
LSM3-201ENST00000306024 ITGB4P16144 1822 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 LOC102724159A0A0B4J2E5 919 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 CUL4AQ13619 759 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 PWP2Q15269 919 aaKnown RBP12.58□□□□□ -0.4
LSM3-201ENST00000306024 GPR108Q9NPR9 543 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 TAOK2Q9UL54 1235 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 JAG2Q9Y219 1238 aa12.58□□□□□ -0.4
LSM3-201ENST00000306024 ATF5Q9Y2D1 282 aaPredicted RBP12.58□□□□□ -0.4
LSM3-201ENST00000306024 MYO1CO00159 1063 aa12.57□□□□□ -0.4
LSM3-201ENST00000306024 SETQ01105 290 aaPredicted RBP12.57□□□□□ -0.4
LSM3-201ENST00000306024 TTF1Q15361 905 aaPredicted RBP12.57□□□□□ -0.4
LSM3-201ENST00000306024 C2CD5Q86YS7 1000 aa12.57□□□□□ -0.4
LSM3-201ENST00000306024 PDCP20941 246 aa12.57□□□□□ -0.4
LSM3-201ENST00000306024 SFPQP23246 707 aaKnown RBP eCLIP12.57□□□□□ -0.4
LSM3-201ENST00000306024 PROM2Q8N271 834 aa12.57□□□□□ -0.4
LSM3-201ENST00000306024 DNAI1Q9UI46 699 aa12.57□□□□□ -0.4
LSM3-201ENST00000306024 C5P01031 1676 aa12.57□□□□□ -0.4
LSM3-201ENST00000306024 ZBTB7AO95365 584 aa12.57□□□□□ -0.4
LSM3-201ENST00000306024 OAS2P29728 719 aaKnown RBP12.57□□□□□ -0.4
LSM3-201ENST00000306024 NMIQ13287 307 aaPredicted RBP12.57□□□□□ -0.4
LSM3-201ENST00000306024 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.57□□□□□ -0.4
LSM3-201ENST00000306024 RIMBP2O15034 1052 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 PHKA1P46020 1223 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 GYG1P46976 350 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 FOSBP53539 338 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 SF3B3Q15393 1217 aaKnown RBP12.56□□□□□ -0.4
LSM3-201ENST00000306024 AIDAQ96BJ3 306 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 ZC3H12CQ9C0D7 883 aaKnown RBP12.56□□□□□ -0.4
LSM3-201ENST00000306024 CLGNO14967 610 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 TRIM66O15016 1216 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 KINO60870 393 aaKnown RBP12.56□□□□□ -0.4
LSM3-201ENST00000306024 ZAP70P43403 619 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 BCAMP50895 628 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 CCDC102BQ68D86 513 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 AMIGO3Q86WK7 504 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 RIPOR2Q9Y4F9 1068 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 TPM1P09493 284 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 SLC9C2Q5TAH2 1124 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 ICE2Q659A1 982 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 JAKMIP1Q96N16 626 aaKnown RBP12.56□□□□□ -0.4
LSM3-201ENST00000306024 SDF4Q9BRK5 362 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 NAT10Q9H0A0 1025 aaKnown RBP12.56□□□□□ -0.4
LSM3-201ENST00000306024 GGA1Q9UJY5 639 aa12.56□□□□□ -0.4
LSM3-201ENST00000306024 ALDH1B1P30837 517 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 HIBADHP31937 336 aaKnown RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 GRAPQ13588 217 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 FAM173BQ6P4H8 233 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 GRAPLQ8TC17 118 aaPredicted RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 PI4K2BQ8TCG2 481 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 ARFGAP3Q9NP61 516 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 BSDC1Q9NW68 430 aaPredicted RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 TOGARAM1Q9Y4F4 1720 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 PATL2C9JE40 543 aaKnown RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 PNMA6AP0CW24 399 aaPredicted RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 CLCN6P51797 869 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 SCAND2PQ9GZW5 306 aaPredicted RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 PDRG1Q9NUG6 133 aa12.55□□□□□ -0.4
LSM3-201ENST00000306024 PRPF40BQ6NWY9 871 aaKnown RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 DZIP1Q86YF9 867 aaKnown RBP12.55□□□□□ -0.4
LSM3-201ENST00000306024 RAD50Q92878 1312 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 AP5Z1O43299 807 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 TTLL5Q6EMB2 1281 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 ZNF804AQ7Z570 1209 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 CEP57L1Q8IYX8 460 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 KBTBD3Q8NAB2 608 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 MINPP1Q9UNW1 487 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 CYP46A1Q9Y6A2 500 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 DHX16O60231 1041 aaKnown RBP12.54□□□□□ -0.4
LSM3-201ENST00000306024 IVLP07476 585 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 AK2P54819 239 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 GSDMDP57764 484 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 UBE4AQ14139 1066 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 BANK1Q8NDB2 785 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 FAM227BQ96M60 508 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 ADAMTS7Q9UKP4 1686 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 CCP110O43303 1012 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 BBOX1O75936 387 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 LIG1P18858 919 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 SF3A1Q15459 793 aaKnown RBP12.54□□□□□ -0.4
LSM3-201ENST00000306024 PI16Q6UXB8 463 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 DPP8Q6V1X1 898 aaPredicted RBP12.54□□□□□ -0.4
LSM3-201ENST00000306024 LRRC8AQ8IWT6 810 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 CCDC102AQ96A19 550 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 HAUS7Q99871 368 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 RRP15Q9Y3B9 282 aaKnown RBP12.54□□□□□ -0.4
LSM3-201ENST00000306024 MRVI1Q9Y6F6 885 aa12.54□□□□□ -0.4
LSM3-201ENST00000306024 SIPA1L3O60292 1781 aaPredicted RBP12.53□□□□□ -0.4
LSM3-201ENST00000306024 ABCC12Q96J65 1359 aa12.53□□□□□ -0.4
LSM3-201ENST00000306024 ZFYP08048 801 aaPredicted RBP12.53□□□□□ -0.4
LSM3-201ENST00000306024 TRDNQ13061 729 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms