RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 APOA5Q6Q788 366 aa28.24■■■□□ 2.11
SPTSSA-201ENST00000298130 RRP12Q5JTH9 1297 aaKnown RBP28.24■■■□□ 2.11
SPTSSA-201ENST00000298130 NLRP10Q86W26 655 aa28.24■■■□□ 2.11
SPTSSA-201ENST00000298130 TRMT112Q9UI30 125 aaKnown RBP28.24■■■□□ 2.11
SPTSSA-201ENST00000298130 ABCC6O95255 1503 aa28.24■■■□□ 2.11
SPTSSA-201ENST00000298130 SH2B2O14492 632 aaPredicted RBP28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 IRS4O14654 1257 aaPredicted RBP28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 FOXN1O15353 648 aa28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 SLC39A14Q15043 492 aa28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 NKX1-1Q15270 411 aaPredicted RBP28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 CCDC102BQ68D86 513 aa28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 LRRN4CLQ8ND94 238 aa28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 RANBP6O60518 1105 aaKnown RBP28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 CMA1P23946 247 aa28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 TOMM22Q9NS69 142 aa28.23■■■□□ 2.11
SPTSSA-201ENST00000298130 PDE6AP16499 860 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 ELF2Q15723 593 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 A0A0G2JS52 829 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 ANKRD18BA2A2Z9 1011 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 TACC3Q9Y6A5 838 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 ZMYM6O95789 1325 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 FANCCQ00597 558 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 SYT10Q6XYQ8 523 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 SLC26A6Q9BXS9 759 aa28.22■■■□□ 2.11
SPTSSA-201ENST00000298130 ATP2B1P20020 1258 aa28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 SFPQP23246 707 aaKnown RBP eCLIP28.21■■■□□ 2.118e-6■■■■□ 25.1
SPTSSA-201ENST00000298130 GUCY1A2P33402 732 aa28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 CHMP4CQ96CF2 233 aa28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 HSD3B7Q9H2F3 369 aa28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 CTSWP56202 376 aa28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 TMEM67Q5HYA8 995 aa28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 GIGYF2Q6Y7W6 1299 aaKnown RBP28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 AIDAQ96BJ3 306 aa28.21■■■□□ 2.11
SPTSSA-201ENST00000298130 PRKAB2O43741 272 aa28.2■■■□□ 2.11
SPTSSA-201ENST00000298130 OSBPL5Q9H0X9 879 aaPredicted RBP28.2■■■□□ 2.11
SPTSSA-201ENST00000298130 GOLGA8AA7E2F4 631 aa28.2■■■□□ 2.1
SPTSSA-201ENST00000298130 ZBTB43O43298 467 aa28.2■■■□□ 2.1
SPTSSA-201ENST00000298130 LONRF3Q496Y0 759 aa28.2■■■□□ 2.1
SPTSSA-201ENST00000298130 PPP1R13BQ96KQ4 1090 aa28.2■■■□□ 2.1
SPTSSA-201ENST00000298130 ARMT1Q9H993 441 aa28.2■■■□□ 2.1
SPTSSA-201ENST00000298130 KCNJ14Q9UNX9 436 aa28.2■■■□□ 2.1
SPTSSA-201ENST00000298130 ZBTB1Q9Y2K1 713 aa28.2■■■□□ 2.1
SPTSSA-201ENST00000298130 MAP3K15Q6ZN16 1313 aa28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 IARSP41252 1262 aaKnown RBP28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 GRIN1Q05586 938 aa28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 DMTNQ08495 405 aa28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 SLC4A9Q96Q91 983 aa28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 CARD10Q9BWT7 1032 aa28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 FAM217BQ9NTX9 383 aaPredicted RBP28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 GSDMDP57764 484 aa28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 FOXP4Q8IVH2 680 aaPredicted RBP28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 KIF18AQ8NI77 898 aa28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 COL5A2P05997 1499 aaPredicted RBP28.19■■■□□ 2.1
SPTSSA-201ENST00000298130 PDE8BO95263 885 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 TRIM28Q13263 835 aaKnown RBP28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 PTPAQ15257 358 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 MAGEB6Q8N7X4 407 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 IGDCC4Q8TDY8 1250 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 EPB41L4AQ9HCS5 686 aaPredicted RBP28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 ZSWIM5Q9P217 1185 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 STRCP1A6NGW2 1772 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 TMEM232C9JQI7 657 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 KMT5BQ4FZB7 885 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 VGLL2Q8N8G2 317 aa28.18■■■□□ 2.1
SPTSSA-201ENST00000298130 STARD3NLO95772 234 aa28.17■■■□□ 2.1
SPTSSA-201ENST00000298130 SERPINC1P01008 464 aa28.17■■■□□ 2.1
SPTSSA-201ENST00000298130 UBN2Q6ZU65 1347 aa28.17■■■□□ 2.1
SPTSSA-201ENST00000298130 MBD4O95243 580 aa28.17■■■□□ 2.1
SPTSSA-201ENST00000298130 PLA2G12BQ9BX93 195 aa28.17■■■□□ 2.1
SPTSSA-201ENST00000298130 LY9Q9HBG7 655 aa28.17■■■□□ 2.1
SPTSSA-201ENST00000298130 BTBD18B2RXH4 712 aa28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 IFIT3O14879 490 aaKnown RBP28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 NTRK3Q16288 839 aa28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 CFAP100Q494V2 611 aa28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 STRBPQ96SI9 672 aaKnown RBP28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 MAP3K14Q99558 947 aa28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 IQSEC3Q9UPP2 1182 aaPredicted RBP28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 METTL16Q86W50 562 aaKnown RBP28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 TICAM2Q86XR7 235 aa28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 FBXO3Q9UK99 471 aa28.16■■■□□ 2.1
SPTSSA-201ENST00000298130 MYO5AQ9Y4I1 1855 aaKnown RBP28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 SMIM22K7EJ46 135 aa28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 UBASH3AP57075 661 aa28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 PDE4BQ07343 736 aa28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 ZNF827Q17R98 1081 aa28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 FANCLQ9NW38 375 aa28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 TPM4P67936 248 aa28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 FAM177A1Q8N128 213 aaPredicted RBP28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 GNL3Q9BVP2 549 aaKnown RBP eCLIP28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 NAPBQ9H115 298 aa28.15■■■□□ 2.1
SPTSSA-201ENST00000298130 TNS2Q63HR2 1409 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 FBXO38Q6PIJ6 1188 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 HOMER1Q86YM7 354 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 GRAMD1CQ8IYS0 662 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 MIGA1Q8NAN2 632 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 BPIFA3Q9BQP9 254 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 TMX1Q9H3N1 280 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 CGNQ9P2M7 1197 aaKnown RBP28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 PCDHA5Q9Y5H7 936 aa28.14■■■□□ 2.1
SPTSSA-201ENST00000298130 TCRBV5S4A2TA0A5A2 114 aa28.14■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms