RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 DCCP43146 1447 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SSBP05455 408 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 STK3Q13188 491 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 C6orf163Q5TEZ5 329 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ARFGAP2Q8N6H7 521 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 NIP7Q9Y221 180 aaKnown RBP eCLIP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 CLTCQ00610 1675 aaKnown RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SPTLC2O15270 562 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 RRAGBQ5VZM2 374 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 GGA1Q9UJY5 639 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 KIF11P52732 1056 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 RAB3GAP1Q15042 981 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC17Q96LX7 622 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 JPH2Q9BR39 696 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ALKQ9UM73 1620 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 RGL2O15211 777 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SEPT2Q15019 361 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ZNF772Q68DY9 489 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SMARCC2Q8TAQ2 1214 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 LRRC7Q96NW7 1537 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 CALUO43852 315 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 DDAH1O94760 285 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 GAS8O95995 478 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 F13A1P00488 732 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ATP2B4P23634 1241 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 KBTBD3Q8NAB2 608 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 AS3MTQ9HBK9 375 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 DTHD1Q6ZMT9 781 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 MYO3AQ8NEV4 1616 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 PREX1Q8TCU6 1659 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ATP2B1P20020 1258 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 BMS1Q14692 1282 aaKnown RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 GIGYF1O75420 1035 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SYCE1Q8N0S2 351 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 LEMD3Q9Y2U8 911 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ERBB3P21860 1342 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 CTAGE9A4FU28 777 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SCP2P22307 547 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 FAM160A1Q05DH4 1040 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 FOXD4L6Q3SYB3 417 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 FOXD4L3Q6VB84 417 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ZNF274Q96GC6 653 aaPredicted RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 TMX3Q96JJ7 454 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 EYA1Q99502 592 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 OVOS2A0A0J9YW53 1432 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 OVOS2Q6IE36 1432 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 ENOX2Q16206 610 aaKnown RBP4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SLC26A6Q9BXS9 759 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 USP31Q70CQ4 1352 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 KLF18A0A0U1RQI7 1052 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 ALCAMQ13740 583 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 MTHFSDQ2M296 383 aaKnown RBP4.86□□□□□ -1.63
VPS13C-202ENST00000261517 TRIM47Q96LD4 638 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 SCLT1Q96NL6 688 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 FRMD4BQ9Y2L6 1034 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 IKBKGQ9Y6K9 419 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 FERP16591 822 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 VAV2P52735 878 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 NAPAP54920 295 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 SLC9C2Q5TAH2 1124 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 CREB3L3Q68CJ9 461 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 MCF2L2Q86YR7 1114 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 SLFN12Q8IYM2 578 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 ANKS4BQ8N8V4 417 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 NOX5Q96PH1 765 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 PICK1Q9NRD5 415 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 SSX2IPQ9Y2D8 614 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 USH1CQ9Y6N9 552 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 FOSP01100 380 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-202ENST00000261517 PCCAP05165 728 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-202ENST00000261517 P4HA1P13674 534 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 GIMAP6Q6P9H5 292 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 CDC37L1Q7L3B6 337 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 CHURC1Q8WUH1 139 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 PRC1O43663 620 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 EPB41P11171 864 aaKnown RBP4.86□□□□□ -1.63
VPS13C-202ENST00000261517 CHMLP26374 656 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 IL6STP40189 918 aaPredicted RBP4.86□□□□□ -1.63
VPS13C-202ENST00000261517 CLEC4GQ6UXB4 293 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 MTUS1Q9ULD2 1270 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 COPB2P35606 906 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 CNKSR1Q969H4 720 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 WDR17Q8IZU2 1322 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 IGSF1Q8N6C5 1336 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 A0A1B0GVL5 298 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 KIAA0753Q2KHM9 967 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 IFT74Q96LB3 600 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 OSBPL3Q9H4L5 887 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 KIF1AQ12756 1690 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 ABCA6Q8N139 1617 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 FER1L4A9Z1Z3 1794 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 EIF3CLB5ME19 914 aaKnown RBP4.86□□□□□ -1.63
VPS13C-202ENST00000261517 RPS6KB1P23443 525 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 TNNC1P63316 161 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 GCKRQ14397 625 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 LMBR1LQ6UX01 489 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 PLEKHM2Q8IWE5 1019 aa4.86□□□□□ -1.63
VPS13C-202ENST00000261517 EIF3CQ99613 913 aaKnown RBP4.86□□□□□ -1.63
VPS13C-202ENST00000261517 SLAIN2Q9P270 581 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms