RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Pcdhb5Q91XZ5 792 aa11.64□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Slc27a3O88561 667 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Top1Q04750 767 aaKnown RBP11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Zfp397Q7TNK4 527 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Fermt2Q8CIB5 680 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Fbxo3Q9DC63 480 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ubn2Q80WC1 1314 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gm5624F6ZZG8 207 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Foxp1P58462 705 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Smarcc2Q6PDG5 1213 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Hook2Q7TMK6 716 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cyp4f39Q8BGU0 532 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Me3Q8BMF3 604 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Palm3A2TJV2 734 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gm5934D3Z4U6 212 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Oas2E9Q9A9 742 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Serpinb6bO08804 377 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Mybl2P48972 704 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ccdc189Q6NZQ0 333 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Zfp251Q6PCX8 632 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Miga2Q8BK03 593 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Slc35g1Q8BY79 368 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Mylk2Q8VCR8 613 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cdca7lQ922M5 438 aa11.63□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Arhgef1Q61210 920 aaKnown RBP11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ehd4Q9EQP2 541 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Mcm6P97311 821 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Galnt17Q7TT15 598 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Kifc2O08672 792 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 NppbP40753 121 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Kif5bQ61768 963 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Fam43aQ8BUP8 424 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Kif17Q99PW8 1038 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 MycnP03966 462 aaKnown RBP11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Hdhd2Q3UGR5 259 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Rassf4Q8CB96 322 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ifih1Q8R5F7 1025 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Epb41l3Q9WV92 929 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 ShprhQ7TPQ3 1674 aa11.62□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Jdp2P97875 163 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Nlrp2Q4PLS0 1046 aaKnown RBP11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Wdr24Q8CFJ9 790 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Lrrc59Q922Q8 307 aaKnown RBP11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ccdc105Q9D4K7 499 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Hdac6Q9Z2V5 1149 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Sos2Q02384 1333 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Prdm11A2AGX3 565 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Bach2P97303 839 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Polr2dQ9D7M8 142 aaKnown RBP11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Znf568E9PYI1 671 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ehbp1Q69ZW3 1231 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gm20425E9Q035 978 aaKnown RBP11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 CltaO08585 235 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Krt18P05784 423 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 SrprbP47758 269 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 PsdQ5DTT2 1024 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 DbnlQ62418 436 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Simc1E9Q6E9 1354 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Med23Q80YQ2 1367 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 MaddQ80U28 1577 aa11.61□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ugt1a5B2RT14 529 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 E9QMW4 1145 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gm4340L7N2C4 268 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Zfp113Q8C689 439 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cd274Q9EP73 290 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Dip2cE9PWR4 1557 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Zscan25B2RX31 543 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Mx1P09922 631 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Rpl13P47963 211 aaKnown RBP11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Frat1P70339 274 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Gpr108Q91WD0 569 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Antxr1Q9CZ52 562 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Prpf40aQ9R1C7 953 aaKnown RBP11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Pak1O88643 545 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Pkp1P97350 728 aaKnown RBP11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Specc1lQ2KN98 1118 aaKnown RBP11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Tmem2Q5FWI3 1383 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Tnnc1P19123 161 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 4930504O13RikQ8C5Z9 145 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Tecpr2Q3UH45 1423 aa11.6□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Stox1B2RQL2 990 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 MthfslL7N466 203 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Dcaf5Q80T85 946 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 AbraQ8BUZ1 375 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Plcd3Q8K2J0 785 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ssfa2Q922B9 1252 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cnpy2Q9QXT0 182 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Aox4Q3TYQ9 1336 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Prpf40bQ80W14 870 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Rbm43Q99J64 343 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ppil4Q9CXG3 492 aaKnown RBP11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Lman1Q9D0F3 517 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ccdc89Q9DA73 370 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Kcnn1Q9EQR3 537 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Bin2D3Z6Q9 489 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Anxa1P10107 346 aaKnown RBP11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Cdr2P97817 455 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Rbm12b2Q66JV4 834 aaKnown RBP11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Ctdp1Q7TSG2 960 aa11.59□□□□□ -0.55
Ccdc40-201ENSMUST00000035935 Dbndd1Q9CZ00 160 aa11.59□□□□□ -0.55
Retrieved 100 of 22,080 RNA–protein pairs in 48.8 ms