RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 MMD2Q8IY49 270 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 ZNF714Q96N38 554 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 METRNQ9UJH8 293 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 A0A087WX48 190 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 SRRM5B3KS81 715 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 C1QTNF9P0C862 333 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 LINC00869P0C866 280 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 LMO1P25800 156 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 ZNF726P1Q15940 193 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 TMEM30BQ3MIR4 351 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 Q6ZWC4 215 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 WDR86Q86TI4 376 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 LINC00694P0DN24 101 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 CBLN1P23435 193 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 LINC00205P59089 165 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 IBA57Q5T440 356 aaKnown RBP8.55□□□□□ -1.04
LIG1-220ENST00000601091 TREML4Q6UXN2 200 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 DNAJC30Q96LL9 226 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 IMMP2LQ96T52 175 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 PAXXQ9BUH6 204 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 ARFGEF3Q5TH69 2177 aa8.55□□□□□ -1.04
LIG1-220ENST00000601091 IGHV1-18A0A0C4DH31 117 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 ZNF561-AS1K7EIQ3 104 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 F2RL2O00254 374 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 CD5LO43866 347 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 CGAP01215 116 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 CD3EP07766 207 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 C10orf126Q8N4M7 172 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 DPRXA6NFQ7 191 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 FAM159AQ6UWV7 190 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 NEGR1Q7Z3B1 354 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 DEFB125Q8N687 156 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 IL17DQ8TAD2 202 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 IL36BQ9NZH7 164 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 PCNX2A6NKB5 2137 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 NUP210LQ5VU65 1888 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 IGHV2-26A0A0B4J1V2 119 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 DLL1O00548 723 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 RBPMS2Q6ZRY4 209 aaKnown RBP8.54□□□□□ -1.04
LIG1-220ENST00000601091 HAPLN4Q86UW8 402 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 CD177Q8N6Q3 437 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 RPEQ96AT9 228 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 TMEM126AQ9H061 195 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 PRSS29PA6NIE9 313 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 C15orf61A6NNL5 157 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 K7EP34 96 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 APCSP02743 223 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 MFAP2P55001 183 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 CENPWQ5EE01 88 aa8.54□□□□□ -1.04
LIG1-220ENST00000601091 COL6A3P12111 3177 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 A0A0U1RQV1 116 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 C15orf62A8K5M9 175 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 IGKV3-15P01624 115 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 Q56UQ5 140 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 EML6Q6ZMW3 1958 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 SAA2-SAA4A0A096LPE2 208 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 RBP4P02753 201 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 PFN1P07737 140 aaKnown RBP8.53□□□□□ -1.04
LIG1-220ENST00000601091 SAA2P0DJI9 122 aaPredicted RBP8.53□□□□□ -1.04
LIG1-220ENST00000601091 OCC1Q8TAD7 63 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 TM4SF5O14894 197 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 HLA-DQA1P01909 254 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 LGALS4P56470 323 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 FXYD3Q14802 87 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 EFNB3Q15768 340 aa8.53□□□□□ -1.04
LIG1-220ENST00000601091 TRBV9A0A0B4J1U6 114 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 TRGV8A0A0C4DH27 118 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 IGKV1D-33P01593 117 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 IGKV1-33P01594 117 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 CSN1S1P47710 185 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 HOXA4Q00056 320 aaPredicted RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 FAM216BQ8N7L0 139 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 OSR1Q8TAX0 266 aaPredicted RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 ZNF71Q9NQZ8 489 aaPredicted RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 AMMECR1Q9Y4X0 333 aaPredicted RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 PLCE1Q9P212 2302 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 DSPP15924 2871 aaKnown RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 NBASA2RRP1 2371 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 TMEM213A2RRL7 107 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 FAM27E3Q08E93 113 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 Q6ZPA2 131 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 MIR17HGQ75NE6 70 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 MS4A6AQ9H2W1 248 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 C11orf1Q9H5F2 150 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 PKDREJQ9NTG1 2253 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 TRAV9-1A0A075B6T8 112 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 IGHG3P01860 377 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 VDAC2P45880 294 aaPredicted RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 FAM53AQ6NSI3 398 aaPredicted RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 IL17RELQ6ZVW7 336 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 SPATA25Q9BR10 227 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 RNASE7Q9H1E1 156 aaKnown RBP8.52□□□□□ -1.05
LIG1-220ENST00000601091 IFI27L2Q9H2X8 130 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 ST20Q9HBF5 79 aa8.52□□□□□ -1.05
LIG1-220ENST00000601091 A0A1B0GWB2 263 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 FNDC10F2Z333 226 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 COA6Q5JTJ3 125 aaKnown RBP8.51□□□□□ -1.05
LIG1-220ENST00000601091 SSX8Q7RTT4 187 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 SH2D6Q7Z4S9 175 aa8.51□□□□□ -1.05
LIG1-220ENST00000601091 NPIPB3Q92617 1050 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms