RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 PKIGQ9Y2B9 76 aa1.86□□□□□ -2.11
VPS4B-203ENST00000588323 ZFP30Q9Y2G7 519 aa1.86□□□□□ -2.11
VPS4B-203ENST00000588323 MYO16Q9Y6X6 1858 aa1.86□□□□□ -2.11
VPS4B-203ENST00000588323 FLNAP21333 2647 aaKnown RBP1.86□□□□□ -2.11
VPS4B-203ENST00000588323 VPS13CQ709C8 3753 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TLN2Q9Y4G6 2542 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 MYH9P35579 1960 aaKnown RBP1.85□□□□□ -2.11
VPS4B-203ENST00000588323 PKD1L1Q8TDX9 2849 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TMEM250H0YL14 139 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 J3KT08 172 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 K7EM74 188 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 K7EPK0 472 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 AIPO00170 330 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 CORTO00230 105 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 CDRT1O95170 752 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 REG1AP05451 166 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 OR4A8P0C604 315 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 LINC00869P0C866 280 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 ESDP10768 282 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 NTF3P20783 257 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 GADD45AP24522 165 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 NPY1RP25929 384 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF83P51522 516 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 H2BFSP57053 126 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 HSPE1P61604 102 aaKnown RBP1.85□□□□□ -2.11
VPS4B-203ENST00000588323 IFITM2Q01629 132 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 EBPQ15125 230 aaKnown RBP1.85□□□□□ -2.11
VPS4B-203ENST00000588323 SP6Q3SY56 376 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 COL5A1-AS1Q5SY13 56 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 NCMAPQ5T1S8 102 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TMEM78Q5T7P6 136 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 LYRM7Q5U5X0 104 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 SPATA31B1PQ5VZV4 182 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TEX261Q6UWH6 196 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 SCGB1D4Q6XE38 83 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 ZFP2Q6ZN57 461 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 VN1R4Q7Z5H5 301 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 MARCH3Q86UD3 253 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 BAP18Q8IXM2 172 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 SAXO1Q8IYX7 474 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 ZNF101Q8IZC7 436 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TCTE3Q8IZS6 198 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 OR8I2Q8N0Y5 310 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 SLC30A7Q8NEW0 376 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 OR5K1Q8NHB7 308 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 UBALD1Q8TB05 177 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 OR5P3Q8WZ94 311 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 CCDC115Q96NT0 180 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 PKMYT1Q99640 499 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 RNF5Q99942 180 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 LPAR5Q9H1C0 372 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TAF9BQ9HBM6 251 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 UBQLN4Q9NRR5 601 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 LYRM2Q9NU23 88 aaPredicted RBP1.85□□□□□ -2.11
VPS4B-203ENST00000588323 ACER3Q9NUN7 267 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 UQCC1Q9NVA1 299 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 C14orf105Q9NVL8 296 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TMEM38BQ9NVV0 291 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 MED29Q9NX70 200 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 TMEM216Q9P0N5 145 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 DHCR7Q9UBM7 475 aaKnown RBP1.85□□□□□ -2.11
VPS4B-203ENST00000588323 HDGFL3Q9Y3E1 203 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 YTHDF2Q9Y5A9 579 aaKnown RBP1.85□□□□□ -2.11
VPS4B-203ENST00000588323 V9GYS6 101 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 DYSFO75923 2080 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 NUMA1Q14980 2115 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 CEP192Q8TEP8 1941 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 PTPRJQ12913 1337 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 SHANK1Q9Y566 2161 aa1.85□□□□□ -2.11
VPS4B-203ENST00000588323 PRRC2CQ9Y520 2896 aaKnown RBP1.84□□□□□ -2.11
VPS4B-203ENST00000588323 LINC00862A6NCI5 91 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 LEUTXA8MZ59 168 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 EEF1E1-BLOC1S5C9J1V9 151 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 D6RAR5 112 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 INMT-MINDY4F8WBC2 141 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 C15orf65H3BRN8 121 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 PIRO00625 290 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 EEF1E1O43324 174 aaKnown RBP1.84□□□□□ -2.11
VPS4B-203ENST00000588323 KCNK2O95069 426 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 WISP3O95389 354 aaPredicted RBP1.84□□□□□ -2.11
VPS4B-203ENST00000588323 HBZP02008 142 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 COX6B1P14854 86 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 GPX2P18283 190 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 CXCL3P19876 107 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 MIPP30301 263 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 TGFBR1P36897 503 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 GABRA2P47869 451 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 INPP1P49441 399 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 EVX1P49640 407 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 GZMMP51124 257 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 DEFA1P59665 94 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 PFN3P60673 137 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 NCS1P62166 190 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 RPS28P62857 69 aaKnown RBP1.84□□□□□ -2.11
VPS4B-203ENST00000588323 HIST1H1AQ02539 215 aaPredicted RBP1.84□□□□□ -2.11
VPS4B-203ENST00000588323 PRDX4Q13162 271 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 PMAIP1Q13794 54 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 OR8B8Q15620 311 aa1.84□□□□□ -2.11
VPS4B-203ENST00000588323 IAH1Q2TAA2 248 aaPredicted RBP1.84□□□□□ -2.11
VPS4B-203ENST00000588323 DEFB109BQ30KR1 87 aa1.84□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms