RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 RPL35P42766 123 aaKnown RBP1.11□□□□□ -2.23
CHD3-217ENST00000574022 RPL26P61254 145 aaKnown RBP1.11□□□□□ -2.23
CHD3-217ENST00000574022 HBBP68871 147 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 PSG9Q00887 426 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 SLC38A11Q08AI6 406 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 SS18Q15532 418 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 NNATQ16517 81 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 DEFB115Q30KQ5 88 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 ZNF791Q3KP31 576 aaPredicted RBP1.11□□□□□ -2.23
CHD3-217ENST00000574022 VMA21Q3ZAQ7 101 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 SPANXN5Q5MJ07 72 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 C4orf22Q6V702 233 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 Q6ZQT0 140 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 PHF5AQ7RTV0 110 aaKnown RBP1.11□□□□□ -2.23
CHD3-217ENST00000574022 LRRC28Q86X40 367 aaPredicted RBP1.11□□□□□ -2.23
CHD3-217ENST00000574022 LINC00304Q8N9R0 145 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 OR8B3Q8NGG8 313 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 OR5D16Q8NGK9 328 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 LINC00467Q9BRT7 94 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 LXNQ9BS40 222 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 BCL2L10Q9HD36 194 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 TAS2R4Q9NYW5 299 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 PRO2289Q9P1D8 64 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 COPZ2Q9P299 210 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 RPL26L1Q9UNX3 145 aaKnown RBP1.11□□□□□ -2.23
CHD3-217ENST00000574022 HS3ST2Q9Y278 367 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 SBF1O95248 1867 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 A2MP01023 1474 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 SMARCA4P51532 1647 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 STRCQ7RTU9 1775 aa1.11□□□□□ -2.23
CHD3-217ENST00000574022 COL1A2P08123 1366 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 MED23Q9ULK4 1368 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 CACNA1DQ01668 2161 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 IGHV1-58A0A0C4DH39 117 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 TRBV7-6A0A0J9YX20 115 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 LOC107984640A0A0U1RRK4 108 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 SDHAF1A6NFY7 115 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 A8MWV9 139 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 RER1O15258 196 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 DPM2O94777 84 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 TNFSF15O95150 251 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 MT-ND6P03923 174 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 CTSDP07339 412 aaPredicted RBP1.1□□□□□ -2.23
CHD3-217ENST00000574022 SCTP09683 121 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 P0C880 135 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 P0DMU3 169 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 FAM231AP0DMU4 169 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 FAM231CP0DMU5 169 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 MGST1P10620 155 aaKnown RBP1.1□□□□□ -2.23
CHD3-217ENST00000574022 COX4I1P13073 169 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 SDC4P31431 198 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 KRTAP10-5P60370 271 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 KRTAP10-6P60371 365 aaPredicted RBP1.1□□□□□ -2.23
CHD3-217ENST00000574022 ZNF345Q14585 488 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 ESRGQ1W209 222 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 MORN2Q502X0 79 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 LCE3EQ5T5B0 92 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 IGFL3Q6UXB1 125 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 ZNF826PQ6ZT77 177 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 Q6ZTI0 123 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 LINC00305Q7Z4B0 112 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 TCTE3Q8IZS6 198 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 LINC00471Q8N535 108 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 C3orf56Q8N813 242 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 OR8J3Q8NGG0 315 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 OR4K15Q8NH41 348 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 ZC2HC1AQ96GY0 325 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 PFDN5Q99471 154 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 PRO0461Q9UI25 63 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 HSPB8Q9UJY1 196 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 ARHGAP32A7KAX9 2087 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 ERCC6Q03468 1493 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 TCOF1Q13428 1488 aaKnown RBP1.1□□□□□ -2.23
CHD3-217ENST00000574022 TAF1LQ8IZX4 1826 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 MALRD1Q5VYJ5 2156 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 NISCHQ9Y2I1 1504 aa1.1□□□□□ -2.23
CHD3-217ENST00000574022 GLI3P10071 1580 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 FRMPD1Q5SYB0 1578 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 BICRAQ9NZM4 1560 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 MYH10P35580 1976 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 IGLV3-9A0A075B6K5 115 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 TRAV13-1A0A0B4J241 112 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 TRAV3A0A0B4J244 114 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 TRAV1-1A0A0B4J248 108 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 C9JAW5 83 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 OR2H2O95918 312 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 UBBP0CG47 229 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 ZNF705BP0CI00 300 aaPredicted RBP1.09□□□□□ -2.23
CHD3-217ENST00000574022 AZU1P20160 251 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 KRTAP12-2P59991 146 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 KRTAP1-1Q07627 177 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 KLRD1Q13241 179 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 TAF9Q16594 264 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 TMEM155Q4W5P6 130 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 HCP5Q6MZN7 132 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 PATE2Q6UY27 113 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 C7orf65Q6ZTY9 151 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 LYPD1Q8N2G4 141 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 TEX29Q8N6K0 151 aa1.09□□□□□ -2.23
CHD3-217ENST00000574022 LINC00301Q8NCQ3 95 aa1.09□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms