RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 A8MWL6 223 aa2.56□□□□□ -2
VPS35-208ENST00000568612 EPM2AB3EWF7 344 aa2.56□□□□□ -2
VPS35-208ENST00000568612 SPINT2O43291 252 aa2.56□□□□□ -2
VPS35-208ENST00000568612 CXCL13O43927 109 aa2.56□□□□□ -2
VPS35-208ENST00000568612 NKX2-2O95096 273 aa2.56□□□□□ -2
VPS35-208ENST00000568612 NDUFB4O95168 129 aa2.56□□□□□ -2
VPS35-208ENST00000568612 NDUFC2O95298 119 aa2.56□□□□□ -2
VPS35-208ENST00000568612 IGKV3-20P01619 116 aa2.56□□□□□ -2
VPS35-208ENST00000568612 OR5AL1P0C617 328 aa2.56□□□□□ -2
VPS35-208ENST00000568612 IGHV4-30-4P0DP06 118 aa2.56□□□□□ -2
VPS35-208ENST00000568612 HLA-DRB4P13762 266 aa2.56□□□□□ -2
VPS35-208ENST00000568612 COX7CP15954 63 aa2.56□□□□□ -2
VPS35-208ENST00000568612 PEBP1P30086 187 aaKnown RBP2.56□□□□□ -2
VPS35-208ENST00000568612 DSCR4P56555 118 aaPredicted RBP2.56□□□□□ -2
VPS35-208ENST00000568612 PRDX1Q06830 199 aaKnown RBP2.56□□□□□ -2
VPS35-208ENST00000568612 UNC119Q13432 240 aa2.56□□□□□ -2
VPS35-208ENST00000568612 VGLL4Q14135 290 aa2.56□□□□□ -2
VPS35-208ENST00000568612 PSMG4Q5JS54 123 aa2.56□□□□□ -2
VPS35-208ENST00000568612 MRPL2Q5T653 305 aaKnown RBP2.56□□□□□ -2
VPS35-208ENST00000568612 AAED1Q7RTV5 226 aa2.56□□□□□ -2
VPS35-208ENST00000568612 HMGN2P46Q86SG4 172 aa2.56□□□□□ -2
VPS35-208ENST00000568612 RPS19BP1Q86WX3 136 aaKnown RBP2.56□□□□□ -2
VPS35-208ENST00000568612 PIANPQ8IYJ0 282 aa2.56□□□□□ -2
VPS35-208ENST00000568612 TDHQ8IZJ6 230 aa2.56□□□□□ -2
VPS35-208ENST00000568612 SLC25A45Q8N413 288 aa2.56□□□□□ -2
VPS35-208ENST00000568612 ZNF441Q8N8Z8 693 aa2.56□□□□□ -2
VPS35-208ENST00000568612 LRRC29Q8WV35 223 aa2.56□□□□□ -2
VPS35-208ENST00000568612 RND1Q92730 232 aa2.56□□□□□ -2
VPS35-208ENST00000568612 CHCHD1Q96BP2 118 aaKnown RBP2.56□□□□□ -2
VPS35-208ENST00000568612 BMFQ96LC9 184 aa2.56□□□□□ -2
VPS35-208ENST00000568612 PDCD1LG2Q9BQ51 273 aa2.56□□□□□ -2
VPS35-208ENST00000568612 KXD1Q9BQD3 176 aa2.56□□□□□ -2
VPS35-208ENST00000568612 C1QTNF5Q9BXJ0 243 aa2.56□□□□□ -2
VPS35-208ENST00000568612 KRTAP2-2Q9BYT5 123 aa2.56□□□□□ -2
VPS35-208ENST00000568612 PLA2G2FQ9BZM2 168 aa2.56□□□□□ -2
VPS35-208ENST00000568612 IMUPQ9GZP8 106 aa2.56□□□□□ -2
VPS35-208ENST00000568612 KCNIP2Q9NS61 270 aa2.56□□□□□ -2
VPS35-208ENST00000568612 TNFRSF19Q9NS68 423 aa2.56□□□□□ -2
VPS35-208ENST00000568612 KLK5Q9Y337 293 aaPredicted RBP2.56□□□□□ -2
VPS35-208ENST00000568612 LY96Q9Y6Y9 160 aa2.56□□□□□ -2
VPS35-208ENST00000568612 HLA-DRB4X5D2U9 266 aa2.56□□□□□ -2
VPS35-208ENST00000568612 COL16A1Q07092 1604 aaPredicted RBP2.56□□□□□ -2
VPS35-208ENST00000568612 PTPRBP23467 1997 aa2.56□□□□□ -2
VPS35-208ENST00000568612 FANCMQ8IYD8 2048 aa2.56□□□□□ -2
VPS35-208ENST00000568612 IGLV3-22A0A075B6J6 115 aa2.55□□□□□ -2
VPS35-208ENST00000568612 CTXND1A0A1B0GTU2 59 aa2.55□□□□□ -2
VPS35-208ENST00000568612 TEX50A0A1B0GTY4 177 aa2.55□□□□□ -2
VPS35-208ENST00000568612 FAM240AA0A1B0GVK7 77 aa2.55□□□□□ -2
VPS35-208ENST00000568612 CRYM-AS1A6NIL9 109 aa2.55□□□□□ -2
VPS35-208ENST00000568612 C9JCJ5 164 aa2.55□□□□□ -2
VPS35-208ENST00000568612 NDUFC2-KCTD14E9PQ53 114 aa2.55□□□□□ -2
VPS35-208ENST00000568612 K7EQS6 105 aa2.55□□□□□ -2
VPS35-208ENST00000568612 K7ERJ3 54 aa2.55□□□□□ -2
VPS35-208ENST00000568612 LINC01565O15544 149 aa2.55□□□□□ -2
VPS35-208ENST00000568612 SLC25A14O95258 325 aaPredicted RBP2.55□□□□□ -2
VPS35-208ENST00000568612 PPYP01298 95 aa2.55□□□□□ -2
VPS35-208ENST00000568612 IL9P15248 144 aa2.55□□□□□ -2
VPS35-208ENST00000568612 IGFBP3P17936 291 aaPredicted RBP2.55□□□□□ -2
VPS35-208ENST00000568612 HLA-DMBP28068 263 aa2.55□□□□□ -2
VPS35-208ENST00000568612 CSN1S1P47710 185 aa2.55□□□□□ -2
VPS35-208ENST00000568612 FXYD2P54710 66 aa2.55□□□□□ -2
VPS35-208ENST00000568612 FOXA3P55318 350 aaPredicted RBP2.55□□□□□ -2
VPS35-208ENST00000568612 DLX1P56177 255 aa2.55□□□□□ -2
VPS35-208ENST00000568612 FBXW4P57775 412 aa2.55□□□□□ -2
VPS35-208ENST00000568612 SERF2P84101 59 aa2.55□□□□□ -2
VPS35-208ENST00000568612 OR1C1Q15619 314 aa2.55□□□□□ -2
VPS35-208ENST00000568612 VMA21Q3ZAQ7 101 aa2.55□□□□□ -2
VPS35-208ENST00000568612 ZC2HC1BQ5TFG8 222 aa2.55□□□□□ -2
VPS35-208ENST00000568612 LCN10Q6JVE6 187 aa2.55□□□□□ -2
VPS35-208ENST00000568612 CD164L2Q6UWJ8 174 aa2.55□□□□□ -2
VPS35-208ENST00000568612 Q6ZQT7 251 aa2.55□□□□□ -2
VPS35-208ENST00000568612 ZNF493Q6ZR52 646 aa2.55□□□□□ -2
VPS35-208ENST00000568612 SLC25A48Q6ZT89 311 aaKnown RBP2.55□□□□□ -2
VPS35-208ENST00000568612 MEX3DQ86XN8 651 aaKnown RBP2.55□□□□□ -2
VPS35-208ENST00000568612 CEND1Q8N111 149 aa2.55□□□□□ -2
VPS35-208ENST00000568612 C15orf53Q8NAA6 179 aa2.55□□□□□ -2
VPS35-208ENST00000568612 OR10AC1Q8NH08 325 aa2.55□□□□□ -2
VPS35-208ENST00000568612 SPATA3Q8NHX4 192 aa2.55□□□□□ -2
VPS35-208ENST00000568612 PIFOQ8TCI5 191 aa2.55□□□□□ -2
VPS35-208ENST00000568612 MRPL53Q96EL3 112 aaKnown RBP2.55□□□□□ -2
VPS35-208ENST00000568612 LINC01600Q96MT4 127 aa2.55□□□□□ -2
VPS35-208ENST00000568612 ODF3Q96PU9 254 aa2.55□□□□□ -2
VPS35-208ENST00000568612 TXNDC17Q9BRA2 123 aa2.55□□□□□ -2
VPS35-208ENST00000568612 SHANK2-AS3Q9BTD1 123 aa2.55□□□□□ -2
VPS35-208ENST00000568612 CHAC1Q9BUX1 264 aa2.55□□□□□ -2
VPS35-208ENST00000568612 MRPL20Q9BYC9 149 aaKnown RBP2.55□□□□□ -2
VPS35-208ENST00000568612 VSIRQ9H7M9 311 aa2.55□□□□□ -2
VPS35-208ENST00000568612 ZNF286AQ9HBT8 521 aa2.55□□□□□ -2
VPS35-208ENST00000568612 OARD1Q9Y530 152 aa2.55□□□□□ -2
VPS35-208ENST00000568612 TIMM9Q9Y5J7 89 aa2.55□□□□□ -2
VPS35-208ENST00000568612 DOCK9Q9BZ29 2069 aa2.54□□□□□ -2
VPS35-208ENST00000568612 SCN10AQ9Y5Y9 1956 aa2.54□□□□□ -2
VPS35-208ENST00000568612 KIAA1549LQ6ZVL6 1849 aa2.54□□□□□ -2
VPS35-208ENST00000568612 TRAV27A0A087WT01 109 aa2.54□□□□□ -2
VPS35-208ENST00000568612 TRAV13-1A0A0B4J241 112 aa2.54□□□□□ -2
VPS35-208ENST00000568612 TCRBV4S1A1TA0A5B7 111 aa2.54□□□□□ -2
VPS35-208ENST00000568612 LILRA5A6NI73 299 aa2.54□□□□□ -2
VPS35-208ENST00000568612 A8MWV9 139 aa2.54□□□□□ -2
VPS35-208ENST00000568612 C2CD4DB7Z1M9 353 aa2.54□□□□□ -2
VPS35-208ENST00000568612 LINC01619G3V211 115 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms