RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 NFYBP25208 207 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 INSL3P51460 131 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 CCSMST1Q4G0I0 132 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 GLIPR1L1Q6UWM5 242 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 SDIM1Q6ZPB5 146 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 LCA10Q71F78 164 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 GPHB5Q86YW7 130 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 TEX37Q96LM6 180 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 OTORQ9NRC9 128 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 CKLFQ9UBR5 152 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 TP73-AS1Q9UF72 201 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 ABCA5Q8WWZ7 1642 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 ZMYM4Q5VZL5 1548 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 DISP2A7MBM2 1401 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 PRG4Q92954 1404 aaPredicted RBP2.41□□□□□ -2.02
LINC00643-204ENST00000555934 ADGBQ8N7X0 1667 aa2.41□□□□□ -2.02
LINC00643-204ENST00000555934 SAMD9Q5K651 1589 aa2.4□□□□□ -2.02
LINC00643-204ENST00000555934 DNMBPQ6XZF7 1577 aa2.4□□□□□ -2.02
LINC00643-204ENST00000555934 CAMSAP2Q08AD1 1489 aa2.4□□□□□ -2.02
LINC00643-204ENST00000555934 BCL9LQ86UU0 1499 aa2.4□□□□□ -2.02
LINC00643-204ENST00000555934 IGKV1D-43A0A0B4J1Z2 117 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 TAX1BP3O14907 124 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 CD7P09564 240 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 IGLC6P0CF74 106 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 RAB5CP51148 216 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 FGF12P61328 243 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 RRN3P1Q2M238 152 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 TMEM244Q5VVB8 128 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 C1orf140Q5VVS0 124 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 TMEM14EPQ6UXP3 125 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 CTAGE3PQ8IX95 158 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 RPS4Y2Q8TD47 263 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 SFT2D1Q8WV19 159 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 H1FXQ92522 213 aaKnown RBP2.4□□□□□ -2.03
LINC00643-204ENST00000555934 NKX6-2Q9C056 277 aaPredicted RBP2.4□□□□□ -2.03
LINC00643-204ENST00000555934 RNF122Q9H9V4 155 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 EFCAB1Q9HAE3 211 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 SCN3BQ9NY72 215 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 MINOS1-NBL1R4GNA1 71 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 GCC2Q8IWJ2 1684 aa2.4□□□□□ -2.03
LINC00643-204ENST00000555934 PTPN23Q9H3S7 1636 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 UGGT2Q9NYU1 1516 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 CTTNBP2Q8WZ74 1663 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 LOC100130705A0A1B0GUX0 176 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 TMEM218A2RU14 115 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 MEIS3P1A6NDR6 274 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 GGT3PA6NGU5 568 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 TMEM212A6NML5 194 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 C9JCJ5 164 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 NPFFO15130 113 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 CCL25O15444 150 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 SOD1P00441 154 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 IGKV1-5P01602 117 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 APODP05090 189 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST1H2BOP23527 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 CASP1P29466 404 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST1H2BBP33778 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 SDC2P34741 201 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 EIF2B2P49770 351 aaKnown RBP2.39□□□□□ -2.03
LINC00643-204ENST00000555934 GNG4P50150 75 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 ZNF80P51504 273 aaPredicted RBP2.39□□□□□ -2.03
LINC00643-204ENST00000555934 RBM11P57052 281 aaKnown RBP2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST1H2BDP58876 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST1H2BCP62807 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 MSMO1Q15800 293 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST2H2BEQ16778 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.39□□□□□ -2.03
LINC00643-204ENST00000555934 NCMAPQ5T1S8 102 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 SNX29P2Q8IUI4 249 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 IFT20Q8IY31 132 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 RPP25LQ8N5L8 163 aaKnown RBP2.39□□□□□ -2.03
LINC00643-204ENST00000555934 OR4S1Q8NGB4 309 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 OR2T10Q8NGZ9 312 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 PPTC7Q8NI37 304 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 DCANP1Q8TF63 244 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST1H2BHQ93079 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 ZC2HC1AQ96GY0 325 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 MGLLQ99685 303 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST1H2BNQ99877 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 HIST1H2BMQ99879 126 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 CBLN4Q9NTU7 201 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 BAIAP2Q9UQB8 552 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 SOX21Q9Y651 276 aaPredicted RBP2.39□□□□□ -2.03
LINC00643-204ENST00000555934 FOCADQ5VW36 1801 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 ARHGAP31Q2M1Z3 1444 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 MYOM3Q5VTT5 1437 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 GRIN2AQ12879 1464 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 MBD5Q9P267 1494 aa2.39□□□□□ -2.03
LINC00643-204ENST00000555934 TMEM2Q9UHN6 1383 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 TRAV30A0A087WSZ9 112 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 TRBV7-6A0A0J9YX20 115 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 IRGMA1A4Y4 181 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 ZNF860A6NHJ4 632 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 C1orf196B1AJZ1 125 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 ZNF670-ZNF695F2Z2N8 137 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 I3L521 148 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 OR2T1O43869 369 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 NCR2O95944 276 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 ZNF728P0DKX0 622 aa2.38□□□□□ -2.03
LINC00643-204ENST00000555934 HLA-EP13747 358 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms