RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 PLXNA3P51805 1871 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 MORN3Q6PF18 240 aaPredicted RBP9.44□□□□□ -0.9
SYNE2-208ENST00000553289 Q6ZS92 163 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 RPRMLQ8N4K4 120 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 DERL1Q9BUN8 251 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 IGKV1D-17A0A075B6S4 117 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 TRGV4A0A0C4DH28 118 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 TOMM40O96008 361 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 NTF4P34130 210 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 C1orf194Q5T5A4 169 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 MRPL52Q86TS9 123 aaKnown RBP9.44□□□□□ -0.9
SYNE2-208ENST00000553289 ZDBF2Q9HCK1 2354 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 IGKV2-40A0A087WW87 121 aaPredicted RBP9.44□□□□□ -0.9
SYNE2-208ENST00000553289 A0A1W2PRX2 142 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 C5orf63A6NC05 138 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 FAM223BA6NKX1 122 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 IGKV2D-40P01614 121 aaPredicted RBP9.44□□□□□ -0.9
SYNE2-208ENST00000553289 HGFACQ04756 655 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 PSG3Q16557 428 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 FAM223AQ8IWN6 122 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 ESPL1Q14674 2120 aa9.44□□□□□ -0.9
SYNE2-208ENST00000553289 TRAV3A0A0B4J244 114 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 B4DSR2 109 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 GZMBP10144 247 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 PPIFP30405 207 aaKnown RBP9.43□□□□□ -0.9
SYNE2-208ENST00000553289 FHL1Q13642 323 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 TMEM155Q4W5P6 130 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 GLRX5Q86SX6 157 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 DTX1Q86Y01 620 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 SCN5AQ14524 2016 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 EVI2AP22794 236 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 PAX2Q02962 417 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 C3orf36Q3SXR2 165 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 NCOR1P1Q9H4R4 102 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 A0A0G2JNJ9 132 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 TMEM238C9JI98 176 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 EXOC3-AS1Q8N2X6 119 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 Q9UFV3 132 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 SNRNP200O75643 2136 aaKnown RBP9.43□□□□□ -0.9
SYNE2-208ENST00000553289 DPH3P1Q9H4G8 78 aa9.43□□□□□ -0.9
SYNE2-208ENST00000553289 RNASE2P10153 161 aaKnown RBP9.42□□□□□ -0.9
SYNE2-208ENST00000553289 PDE6HQ13956 83 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 LYZL1Q6UWQ5 148 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 OR2K2Q8NGT1 345 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 PLEKHB2Q96CS7 222 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 GFRA4Q9GZZ7 299 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 SDK2Q58EX2 2172 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.42□□□□□ -0.9
SYNE2-208ENST00000553289 D6R8Y8 96 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 ZNF479Q96JC4 524 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 RFNGQ9Y644 331 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 ARHGEF17Q96PE2 2063 aaPredicted RBP9.42□□□□□ -0.9
SYNE2-208ENST00000553289 TRAV8-2A0A0B4J237 113 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 TMEM86BQ8N661 226 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 GTSCR1Q86UQ5 136 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 NUP35Q8NFH5 326 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 ANAPC10Q9UM13 185 aa9.42□□□□□ -0.9
SYNE2-208ENST00000553289 ADARB2-AS1A8MUL3 147 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 LILRA1O75019 489 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 RPL15P61313 204 aaKnown RBP9.41□□□□□ -0.9
SYNE2-208ENST00000553289 SBF1O95248 1867 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 TRAV2A0A0B4J234 112 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 SH2D1AO60880 128 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 PRADC1Q9BSG0 188 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 FNDC4Q9H6D8 234 aaPredicted RBP9.41□□□□□ -0.9
SYNE2-208ENST00000553289 VCYO14598 125 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 HTN3P15516 51 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 LMO1P25800 156 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 ZNF415Q09FC8 603 aa9.41□□□□□ -0.9
SYNE2-208ENST00000553289 A8MWV9 139 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 GFI1BQ5VTD9 330 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 RNF144BQ7Z419 303 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 LINC00469Q8N7U9 141 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 CACNA1DQ01668 2161 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 TMEM8BA6NDV4 472 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 PGPEP1Q9NXJ5 209 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 LCN12Q6JVE5 192 aa9.4□□□□□ -0.9
SYNE2-208ENST00000553289 MDC1Q14676 2089 aaKnown RBP9.4□□□□□ -0.9
SYNE2-208ENST00000553289 KLRD1Q13241 179 aa9.4□□□□□ -0.91
SYNE2-208ENST00000553289 SAMD5Q5TGI4 173 aa9.4□□□□□ -0.91
SYNE2-208ENST00000553289 RCHY1Q96PM5 261 aa9.4□□□□□ -0.91
SYNE2-208ENST00000553289 ERG28Q9UKR5 140 aa9.4□□□□□ -0.91
SYNE2-208ENST00000553289 PRTN3P24158 256 aa9.4□□□□□ -0.91
SYNE2-208ENST00000553289 FAM90A2PQ658T7 463 aa9.4□□□□□ -0.91
SYNE2-208ENST00000553289 THADAQ6YHU6 1953 aa9.4□□□□□ -0.91
SYNE2-208ENST00000553289 CRPP02741 224 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 RPL36AP83881 106 aaKnown RBP9.39□□□□□ -0.91
SYNE2-208ENST00000553289 ATXN8Q156A1 80 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 ZNF329Q86UD4 541 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 RPL36ALQ969Q0 106 aaKnown RBP9.39□□□□□ -0.91
SYNE2-208ENST00000553289 A0A0G2JRQ6 117 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 CD300EQ496F6 205 aaPredicted RBP9.39□□□□□ -0.91
SYNE2-208ENST00000553289 CHCHD5Q9BSY4 110 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 SHANK2-AS3Q9BTD1 123 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 FAM231BA6NCW3 169 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 SLC25A16P16260 332 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 CD33P20138 364 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 LY6DQ14210 128 aa9.39□□□□□ -0.91
SYNE2-208ENST00000553289 ZNF474Q6S9Z5 364 aaPredicted RBP9.39□□□□□ -0.91
SYNE2-208ENST00000553289 Q8TCH9 128 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms