RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 GYG2O15488 501 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 GNG7O60262 68 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 MT-CO2P00403 227 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 PRM2P04554 102 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 FCER2P06734 321 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 PAX9P55771 341 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 GNGT1P63211 74 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 POU2AF1Q16633 256 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 ACSM3Q53FZ2 586 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 TMEM69Q5SWH9 247 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 HOGA1Q86XE5 327 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 C1orf158Q8N1D5 194 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 OR1L8Q8NGR8 309 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 LSM10Q969L4 123 aaKnown RBP4.44□□□□□ -1.7
LIMA1-204ENST00000549064 PINX1Q96BK5 328 aaKnown RBP4.44□□□□□ -1.7
LIMA1-204ENST00000549064 RAB3CQ96E17 227 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 DCSTAMPQ9H295 470 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 PLGRKTQ9HBL7 147 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 CCL28Q9NRJ3 127 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 NDUFA4L2Q9NRX3 87 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 TNFRSF18Q9Y5U5 241 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 SLC17A2O00624 439 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 DENRO43583 198 aaKnown RBP4.43□□□□□ -1.7
LIMA1-204ENST00000549064 SLC22A5O76082 557 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 HPRT1P00492 218 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 HBE1P02100 147 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 PRSS1P07477 247 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 DEFB130BP0DP73 79 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 DEFB130AP0DP74 79 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 HLA-DRB4P13762 266 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 NQO2P16083 231 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 NPPCP23582 126 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 TAGLN2P37802 199 aaKnown RBP4.43□□□□□ -1.7
LIMA1-204ENST00000549064 TAS2R31P59538 309 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 ERVFC1-1P60608 527 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 FCN2Q15485 313 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 RRN3P1Q2M238 152 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 DNAL1Q4LDG9 190 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 OGFRL1Q5TC84 451 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-204ENST00000549064 THOC7Q6I9Y2 204 aaKnown RBP4.43□□□□□ -1.7
LIMA1-204ENST00000549064 ZNF600Q6ZNG1 722 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 HSD17B13Q7Z5P4 300 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-204ENST00000549064 SMIM29Q86T20 159 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 C7orf50Q9BRJ6 194 aaKnown RBP4.43□□□□□ -1.7
LIMA1-204ENST00000549064 SLC35B3Q9H1N7 401 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 AK6Q9Y3D8 172 aaKnown RBP4.43□□□□□ -1.7
LIMA1-204ENST00000549064 HLA-DRB4X5D2U9 266 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 LRP2P98164 4655 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 PKHD1L1Q86WI1 4243 aa4.43□□□□□ -1.7
LIMA1-204ENST00000549064 A0A087WTM6 91 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 A0A1B0GUV1 79 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 LOC100130705A0A1B0GUX0 176 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 HIST1H1DP16402 221 aaKnown RBP4.42□□□□□ -1.7
LIMA1-204ENST00000549064 CRYBB3P26998 211 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 GNRHRP30968 328 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 TALDO1P37837 337 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 ALDH3B2P48448 385 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 RIGQ13278 110 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 RAB11BQ15907 218 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 SSX1Q16384 188 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 ESRGQ1W209 222 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 HSD17B12Q53GQ0 312 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 Q6ZS49 121 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 ZNF709Q8N972 641 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 OR10R2Q8NGX6 335 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 OR1P1Q8NH06 330 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 OR51H1Q8NH63 302 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 DEFB104AQ8WTQ1 72 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 FAM3DQ96BQ1 224 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 TMEM80Q96HE8 168 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 METTL26Q96S19 204 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 VCX2Q9H322 139 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 KLK11Q9UBX7 282 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 OR51B2Q9Y5P1 312 aa4.42□□□□□ -1.7
LIMA1-204ENST00000549064 ZNF705GA8MUZ8 300 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-204ENST00000549064 RBFOX2O43251 390 aaKnown RBP eCLIP4.41□□□□□ -1.7
LIMA1-204ENST00000549064 PTHLHP12272 177 aa4.41□□□□□ -1.7
LIMA1-204ENST00000549064 HES5Q5TA89 166 aa4.41□□□□□ -1.7
LIMA1-204ENST00000549064 OR4B1Q8NGF8 309 aa4.41□□□□□ -1.7
LIMA1-204ENST00000549064 UPK3BQ9BT76 320 aa4.41□□□□□ -1.7
LIMA1-204ENST00000549064 MED4Q9NPJ6 270 aa4.41□□□□□ -1.7
LIMA1-204ENST00000549064 MRPL36Q9P0J6 103 aaKnown RBP4.41□□□□□ -1.7
LIMA1-204ENST00000549064 GOLT1BQ9Y3E0 138 aa4.41□□□□□ -1.7
LIMA1-204ENST00000549064 A0A0J9YY99 117 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 IRGMA1A4Y4 181 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 EFCAB10A6NFE3 127 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 MYL12BO14950 172 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 ATP8B1O43520 1251 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 TMEM50AO95807 157 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 ATP5G1P05496 136 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 UCHL1P09936 223 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 P0C879 139 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 GADD45AP24522 165 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 G6PCP35575 357 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 ATP5G3P48201 142 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 WNT4P56705 351 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 SNRPD3P62318 126 aaKnown RBP4.4□□□□□ -1.71
LIMA1-204ENST00000549064 DHODHQ02127 395 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 ST3GAL4Q11206 333 aa4.4□□□□□ -1.71
LIMA1-204ENST00000549064 CATR1Q13166 79 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms