RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 SLC25A10Q9UBX3 287 aaPredicted RBP11.85□□□□□ -0.51
HOXC11-202ENST00000546378 TRAV9-2A0A087WT02 112 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 COTL1Q14019 142 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 ZNF430Q9H8G1 570 aaPredicted RBP11.84□□□□□ -0.51
HOXC11-202ENST00000546378 PRNDQ9UKY0 176 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 COX11Q9Y6N1 276 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 CACNA1AO00555 2505 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 SRRM5B3KS81 715 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 SAP30O75446 220 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 NCR2O95944 276 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 NBEAP1P0C6P0 100 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 LYPD2Q6UXB3 125 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 LCNL1Q6ZST4 164 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 RNF7Q9UBF6 113 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 ZFYVE26Q68DK2 2539 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 IGHV3-66A0A0C4DH42 116 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 IGLV2-8P01709 118 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 FAM106CPP0CH98 169 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 PRR20EP86478 221 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 PRR20CP86479 221 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 PRR20DP86480 221 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 PRR20BP86481 221 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 PRR20AP86496 221 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 FAM106AQ4KMX7 169 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 IGF2-ASQ6U949 168 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 S100A7AQ86SG5 101 aa11.84□□□□□ -0.51
HOXC11-202ENST00000546378 MT-ND6P03923 174 aa11.83□□□□□ -0.52
HOXC11-202ENST00000546378 RNASE2P10153 161 aaKnown RBP11.83□□□□□ -0.52
HOXC11-202ENST00000546378 Q0VG73 95 aa11.83□□□□□ -0.52
HOXC11-202ENST00000546378 EIF4EBP1Q13541 118 aaPredicted RBP11.83□□□□□ -0.52
HOXC11-202ENST00000546378 IGFL2Q6UWQ7 119 aa11.83□□□□□ -0.52
HOXC11-202ENST00000546378 UPK2O00526 184 aa11.83□□□□□ -0.52
HOXC11-202ENST00000546378 APOHP02749 345 aaPredicted RBP11.83□□□□□ -0.52
HOXC11-202ENST00000546378 RPL24P83731 157 aaKnown RBP11.83□□□□□ -0.52
HOXC11-202ENST00000546378 CD69Q07108 199 aa11.83□□□□□ -0.52
HOXC11-202ENST00000546378 UBE2V1Q13404 147 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 PATE2Q6UY27 113 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 Q6ZS92 163 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 OR1L8Q8NGR8 309 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 DYNLRB1Q9NP97 96 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 OSTCQ9NRP0 149 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 IGHG3P01860 377 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 HIST1H1EP10412 219 aaKnown RBP11.82□□□□□ -0.52
HOXC11-202ENST00000546378 SLC25A34Q6PIV7 304 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 FBXL15Q9H469 300 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 TMEM14BQ9NUH8 114 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 PRSS46E5RG02 174 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 BPIFB3P59826 476 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 ARF6P62330 175 aa11.82□□□□□ -0.52
HOXC11-202ENST00000546378 SPRY2O43597 315 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 CFHR2P36980 270 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 GFRALQ6UXV0 394 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 FA2HQ7L5A8 372 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 C9JCJ5 164 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 H3BUT2 72 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 K7EP13 123 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 PRCDQ00LT1 54 aa11.81□□□□□ -0.52
HOXC11-202ENST00000546378 IGHV1-24A0A0C4DH33 117 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 ARMS2P0C7Q2 107 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 LINC00614P0C842 121 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 HBBP68871 147 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 ZNF329Q86UD4 541 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 THYN1Q9P016 225 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 ZNF257Q9Y2Q1 563 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 USP9YO00507 2555 aaPredicted RBP11.8□□□□□ -0.52
HOXC11-202ENST00000546378 MYO9AB2RTY4 2548 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 CEACAM4O75871 244 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 IGKV3-15P01624 115 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 CRYABP02511 175 aaKnown RBP11.8□□□□□ -0.52
HOXC11-202ENST00000546378 Q9H3A6 140 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 LOC105371242A0A075B767 164 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 MAP1LC3CQ9BXW4 147 aa11.8□□□□□ -0.52
HOXC11-202ENST00000546378 IGKV3-7A0A075B6H7 116 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 IGHV1-46P01743 117 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 CTRLP40313 264 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 OR10J3Q5JRS4 329 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 ZNF474Q6S9Z5 364 aaPredicted RBP11.79□□□□□ -0.52
HOXC11-202ENST00000546378 Q8TAT8 98 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 GTSF1Q8WW33 167 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 MSRB2Q9Y3D2 182 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 LOXL1Q08397 574 aaPredicted RBP11.79□□□□□ -0.52
HOXC11-202ENST00000546378 TMEM75Q8N9X5 138 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 DKK4Q9UBT3 224 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 EPDR1Q9UM22 224 aa11.79□□□□□ -0.52
HOXC11-202ENST00000546378 NACAE9PAV3 2078 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 NKX6-3A6NJ46 265 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 PRRG2O14669 202 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 FCGR2BP31994 310 aaPredicted RBP11.78□□□□□ -0.52
HOXC11-202ENST00000546378 RELQ04864 619 aaPredicted RBP11.78□□□□□ -0.52
HOXC11-202ENST00000546378 TMEM191AQ9H0A3 160 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 MEGF9Q9H1U4 602 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 FOXA2Q9Y261 457 aaPredicted RBP11.78□□□□□ -0.52
HOXC11-202ENST00000546378 POLQO75417 2590 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 TRAV8-6A0A0B4J262 113 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 A0A1W2PPI3 338 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 TMEM213A2RRL7 107 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 SYS1-DBNDD2H3BUS1 97 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 TNFRSF1AP19438 455 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 EVI2AP22794 236 aa11.78□□□□□ -0.52
HOXC11-202ENST00000546378 FAM167A-AS1Q96KT0 104 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms