RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 K7EN84 100 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 SERF1AO75920 110 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 HBBP68871 147 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 VN1R17PQ8TDU5 208 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 TSKUQ8WUA8 353 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 FXYD5Q96DB9 178 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 V9GYV3 84 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 NCOR2Q9Y618 2525 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 NDUFS7O75251 213 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 IGLC1P0CG04 106 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 GPR183P32249 361 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 EEF1AKMT3Q96AZ1 226 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 TXN2Q99757 166 aa8.6□□□□□ -1.03
CLIP1-213ENST00000540338 TMSB15BA0A087X1C1 80 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 DDTP30046 118 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 MORN5Q5VZ52 161 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 PATE2Q6UY27 113 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 COL6A3P12111 3177 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 TOMM40O96008 361 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 TMEM256Q8N2U0 113 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 EXOC3-AS1Q8N2X6 119 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 OR5R1Q8NH85 324 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 FAM167A-AS1Q96KT0 104 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.59□□□□□ -1.03
CLIP1-213ENST00000540338 RAB4AP20338 218 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 YPEL3P61236 119 aaPredicted RBP8.59□□□□□ -1.03
CLIP1-213ENST00000540338 ATP5G2Q06055 141 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 KIR3DL3Q8N743 410 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 METTL26Q96S19 204 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 NEU1Q99519 415 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 MRPL36Q9P0J6 103 aaKnown RBP8.59□□□□□ -1.03
CLIP1-213ENST00000540338 CACNA1BQ00975 2339 aa8.59□□□□□ -1.03
CLIP1-213ENST00000540338 TMEM189A5PLL7 270 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 SIAH2O43255 324 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 UBE2E1P51965 193 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 FA2HQ7L5A8 372 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 TMEM190Q8WZ59 177 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 SOX21Q9Y651 276 aaPredicted RBP8.58□□□□□ -1.04
CLIP1-213ENST00000540338 ARFGEF3Q5TH69 2177 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 DIRC3C9JPN6 131 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 TCF24Q7RTU0 167 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 KLHDC1Q8N7A1 406 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 SHANK2-AS3Q9BTD1 123 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 IGHV3OR16-8A0A075B7F1 116 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 ORM1P02763 201 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 RHOGP84095 191 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 SAPCD1Q5SSQ6 148 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 PRSS3P2Q8NHM4 247 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 PPP1R14DQ9NXH3 145 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 ZFP30Q9Y2G7 519 aa8.58□□□□□ -1.04
CLIP1-213ENST00000540338 IGHV2-70DA0A0C4DH43 119 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 A6NNC1 897 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 H0Y8G0 127 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 BMI1P35226 326 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 SAA4P35542 130 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 RBPMS2Q6ZRY4 209 aaKnown RBP8.57□□□□□ -1.04
CLIP1-213ENST00000540338 DTX2Q86UW9 622 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 OR4B1Q8NGF8 309 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 C1orf159Q96HA4 380 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 CSN3P07498 182 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 RELQ04864 619 aaPredicted RBP8.57□□□□□ -1.04
CLIP1-213ENST00000540338 LY6EQ16553 131 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 LY6G5BQ8NDX9 201 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 PSG8Q9UQ74 426 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 NPFFO15130 113 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 CRYGCP07315 174 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 C11orf42Q8N5U0 333 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 SMIM12Q96EX1 92 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 ZNF503Q96F45 646 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 TEX22C9J3V5 150 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 UQCRFS1P47985 274 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 PAM16Q9Y3D7 125 aa8.57□□□□□ -1.04
CLIP1-213ENST00000540338 RASL11AQ6T310 242 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 CLEC19AQ6UXS0 136 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 LYPD1Q8N2G4 141 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 PIEZO1Q92508 2521 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 IGKV1D-37A0A075B6S9 117 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 RPL15P61313 204 aaKnown RBP8.56□□□□□ -1.04
CLIP1-213ENST00000540338 C15orf32Q32M92 178 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 OR10J3Q5JRS4 329 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 FAM209BQ5JX69 171 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 FAM231DQ6ZW35 169 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 NUP35Q8NFH5 326 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 C7orf69Q9H7B7 122 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 HIF1ANQ9NWT6 349 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 TRAV8-1A0A0A6YYK1 113 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 NPIPB5A8MRT5 1133 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 PLXNB1O43157 2135 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 CLEC3BP05452 202 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 COA6Q5JTJ3 125 aaKnown RBP8.56□□□□□ -1.04
CLIP1-213ENST00000540338 DNLZQ5SXM8 178 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 ATP5L2Q7Z4Y8 100 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 NPBQ8NG41 125 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 TMEM14CQ9P0S9 112 aa8.56□□□□□ -1.04
CLIP1-213ENST00000540338 I3L2K1 104 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 TRGV3P03979 118 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 PF4V1P10720 104 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 IGHV3OR16-13A0A075B7E8 117 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 IGHV3-74A0A0B4J1X5 117 aa8.55□□□□□ -1.04
CLIP1-213ENST00000540338 A0A1B0GUT8 65 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms