RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	C12orf45	Q8N5I9	185 aa	Predicted RBP	0.87	□□□□□ -2.27
CD44-238	ENST00000534296	CHMP6	Q96FZ7	201 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	CEP19	Q96LK0	163 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	YPEL2	Q96QA6	119 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	RETNLB	Q9BQ08	111 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	TLNRD1	Q9H1K6	362 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	ENY2	Q9NPA8	101 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	LAMB2	P55268	1798 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	PCNX1	Q96RV3	2341 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	AHNAK2	Q8IVF2	5795 aa		0.87	□□□□□ -2.27
CD44-238	ENST00000534296	SPEG	Q15772	3267 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	EPPK1	P58107	5090 aa	Known RBP	0.86	□□□□□ -2.27
CD44-238	ENST00000534296	TENM2	Q9NT68	2774 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	OBSL1	O75147	1896 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	TRGV10	A0A0A0MS01	117 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	BUB1B-PAK6	H3BSN5	160 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	HCRT	O43612	131 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	CST8	O60676	142 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	MIF	P14174	115 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	KRR1	Q13601	381 aa	Known RBP	0.86	□□□□□ -2.27
CD44-238	ENST00000534296	TSN	Q15631	228 aa	Known RBP	0.86	□□□□□ -2.27
CD44-238	ENST00000534296	C12orf74	Q32Q52	190 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	LINC01554	Q52M75	96 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	FAM74A1	Q5RGS3	127 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	TEX261	Q6UWH6	196 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	FAM19A2	Q8N3H0	131 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	C15orf53	Q8NAA6	179 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	LINC00301	Q8NCQ3	95 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	TMEM254	Q8TBM7	123 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	C14orf132	Q9NPU4	83 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	OPTC	Q9UBM4	332 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	HS3ST2	Q9Y278	367 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296		U3KQ87	197 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	EXPH5	Q8NEV8	1989 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	ABCA13	Q86UQ4	5058 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	ALPK2	Q86TB3	2170 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	RIMBP3C	A6NJZ7	1639 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	RIMBP3B	A6NNM3	1639 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	HERC1	Q15751	4861 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	RIMBP3	Q9UFD9	1639 aa		0.86	□□□□□ -2.27
CD44-238	ENST00000534296	ANAPC1	Q9H1A4	1944 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	TOPBP1	Q92547	1522 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	MACF1	Q9UPN3	7388 aa	Known RBP	0.85	□□□□□ -2.27
CD44-238	ENST00000534296	SON	P18583	2426 aa	Known RBP	0.85	□□□□□ -2.27
CD44-238	ENST00000534296	CCDC160	A6NGH7	325 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	C2orf70	A6NJV1	201 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	TMEM210	A6NLX4	147 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	HMGB3	O15347	200 aa	Known RBP	0.85	□□□□□ -2.27
CD44-238	ENST00000534296	ATP5H	O75947	161 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	ZNF682	O95780	498 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	IFNA7	P01567	189 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	SSR2	P43308	183 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	ESRG	Q1W209	222 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	RIF1	Q5UIP0	2472 aa	Known RBP	0.85	□□□□□ -2.27
CD44-238	ENST00000534296	C2orf82	Q6UX34	121 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	LCA10	Q71F78	164 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296		Q8N814	137 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	ZNF431	Q8TF32	576 aa	Predicted RBP	0.85	□□□□□ -2.27
CD44-238	ENST00000534296	BORCS5	Q969J3	196 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	LINC00467	Q9BRT7	94 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	IMUP	Q9GZP8	106 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	IDI2-AS1	Q9NZ38	188 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	MTOR	P42345	2549 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	DOCK4	Q8N1I0	1966 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	PIEZO2	Q9H5I5	2752 aa		0.85	□□□□□ -2.27
CD44-238	ENST00000534296	EP400	Q96L91	3159 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	TLN2	Q9Y4G6	2542 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	NUP210L	Q5VU65	1888 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	CENPF	P49454	3210 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	EP300	Q09472	2414 aa	Predicted RBP	0.84	□□□□□ -2.27
CD44-238	ENST00000534296	HYDIN	Q4G0P3	5121 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	TRBV6-8	A0A0A6YYG3	113 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	TRAV3	A0A0B4J244	114 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	OR2J2	O76002	312 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	DEFA3	P59666	94 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	BASP1	P80723	227 aa	Known RBP	0.84	□□□□□ -2.27
CD44-238	ENST00000534296	MRPS15	P82914	257 aa	Known RBP	0.84	□□□□□ -2.27
CD44-238	ENST00000534296	CLECL1	Q8IZS7	167 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	SLC30A7	Q8NEW0	376 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	OR2T35	Q8NGX2	323 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	OR10J5	Q8NHC4	309 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	LINC00526	Q96FQ7	95 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	C9orf16	Q9BUW7	83 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	RNASE7	Q9H1E1	156 aa	Known RBP	0.84	□□□□□ -2.27
CD44-238	ENST00000534296	BCL2L10	Q9HD36	194 aa		0.84	□□□□□ -2.27
CD44-238	ENST00000534296	CEP290	O15078	2479 aa		0.84	□□□□□ -2.28
CD44-238	ENST00000534296	CEP164	Q9UPV0	1460 aa		0.84	□□□□□ -2.28
CD44-238	ENST00000534296	TNRC6B	Q9UPQ9	1833 aa	Known RBP	0.84	□□□□□ -2.28
CD44-238	ENST00000534296	ARHGEF28	Q8N1W1	1705 aa	Known RBP	0.84	□□□□□ -2.28
CD44-238	ENST00000534296	CEP192	Q8TEP8	1941 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	MYH10	P35580	1976 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	TNRC6A	Q8NDV7	1962 aa	Known RBP	0.83	□□□□□ -2.28
CD44-238	ENST00000534296	STAB2	Q8WWQ8	2551 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	TRAV12-1	A0A0B4J245	112 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	AIP	O00170	330 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	OR2T1	O43869	369 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	NDUFC2	O95298	119 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	IFNA6	P05013	189 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	CAPZB	P47756	277 aa		0.83	□□□□□ -2.28
CD44-238	ENST00000534296	PIGP	P57054	158 aa		0.83	□□□□□ -2.28

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