RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 NAPSAO96009 420 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 CD28P10747 220 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 PSG1P11464 419 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 ZNF329Q86UD4 541 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 RNF126Q9BV68 326 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 TRAV5A0A0B4J249 113 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 MSMBP08118 114 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 KLF17Q5JT82 389 aaPredicted RBP12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 GLRX5Q86SX6 157 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 RNASE7Q9H1E1 156 aaKnown RBP12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 TRBV6-6A0A0A6YYG2 114 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 ZNF688P0C7X2 276 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 RPL36AP83881 106 aaKnown RBP12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 TREML4Q6UXN2 200 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 RNF182Q8N6D2 247 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 RPL36ALQ969Q0 106 aaKnown RBP12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 RCHY1Q96PM5 261 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 HBDP02042 147 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 TMEM86BQ8N661 226 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 PEF1Q9UBV8 284 aaKnown RBP12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 H0YJW9 148 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 RPL15P61313 204 aaKnown RBP12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 LCNL1Q6ZST4 164 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 PROK2Q9HC23 129 aa12.09□□□□□ -0.47
PCDHA9-202ENST00000532602 PPIFP30405 207 aaKnown RBP12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 IGFL3Q6UXB1 125 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 PRDM13Q9H4Q3 707 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 NDUFA3O95167 84 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 Q5PR19 223 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 PGPEP1Q9NXJ5 209 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 DOCK9Q9BZ29 2069 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 NDPQ00604 133 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 PMS2P5A8MQ11 134 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 MYO7BQ6PIF6 2116 aa12.08□□□□□ -0.48
PCDHA9-202ENST00000532602 FXYD7P58549 80 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 LINC00477Q96M19 166 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 Q96MF0 132 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 SRSF8Q9BRL6 282 aaKnown RBP12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 SLC25A39Q9BZJ4 359 aaPredicted RBP12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 WFDC1Q9HC57 220 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 GGTLC1Q9BX51 225 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 VSIRQ9H7M9 311 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 SIGLEC9Q9Y336 463 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 TSKUQ8WUA8 353 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 MBD3L1Q8WWY6 194 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 NUP210Q8TEM1 1887 aaPredicted RBP12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 ZNF815PA8K554 130 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 SAA4P35542 130 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 ZNF138P52744 262 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 Q6P435 159 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 DPH3P1Q9H4G8 78 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 INSP01308 110 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 LHFPL1Q86WI0 220 aa12.07□□□□□ -0.48
PCDHA9-202ENST00000532602 TCF15Q12870 199 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 HS3ST6Q96QI5 342 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 PLNP26678 52 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 TTC32Q5I0X7 151 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 ATP5L2Q7Z4Y8 100 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 CLDN16Q9Y5I7 305 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 NPIPB5A8MRT5 1133 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 PRB1P04280 392 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 STAG3L3P0CL85 134 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 NBL1P41271 181 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 LINC01559Q495D7 138 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 IGKV3D-20A0A0C4DH25 116 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 A6NNC1 897 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 SRRM4A7MD48 611 aaKnown RBP12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 ZNF524Q96C55 264 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 COQ2Q96H96 371 aa12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 PARD6GQ9BYG4 376 aaPredicted RBP12.06□□□□□ -0.48
PCDHA9-202ENST00000532602 TRGV1A0A0A0MS02 117 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 FOXL2NBQ6ZUU3 175 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 APOMO95445 188 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 LY6G6FQ5SQ64 297 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 K7EM74 188 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 MORN3Q6PF18 240 aaPredicted RBP12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 DEFB104AQ8WTQ1 72 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 RFNGQ9Y644 331 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 DPM2O94777 84 aa12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 DAZ1Q9NQZ3 744 aaKnown RBP12.05□□□□□ -0.48
PCDHA9-202ENST00000532602 LINC00587B1AMM8 73 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 UBE2E1P51965 193 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 ACTL10Q5JWF8 245 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 PRR31Q5SQ13 230 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 DMRT1Q9Y5R6 373 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 HEATR1Q9H583 2144 aaKnown RBP12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 TNFSF13O75888 250 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 LINC00473A8K010 186 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 SCRT1Q9BWW7 348 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 H0YIZ8 118 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 RPL35AP18077 110 aaKnown RBP12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 SEC11AP67812 179 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 RHPN1-AS1Q9BWJ2 59 aa12.04□□□□□ -0.48
PCDHA9-202ENST00000532602 SRSF3P84103 164 aaKnown RBP12.03□□□□□ -0.48
PCDHA9-202ENST00000532602 SPATA31B1PQ5VZV4 182 aa12.03□□□□□ -0.48
PCDHA9-202ENST00000532602 LYPD1Q8N2G4 141 aa12.03□□□□□ -0.48
PCDHA9-202ENST00000532602 OCC1Q8TAD7 63 aa12.03□□□□□ -0.48
PCDHA9-202ENST00000532602 MPDZO75970 2070 aa12.03□□□□□ -0.48
PCDHA9-202ENST00000532602 IGKV2-40A0A087WW87 121 aaPredicted RBP12.03□□□□□ -0.48
PCDHA9-202ENST00000532602 ZNF503-AS2A6NEH8 195 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms