RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CDK12Q9NYV4 1490 aaPredicted RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 ABCA9Q8IUA7 1624 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 IGLV1-50A0A075B6I6 118 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TRBV20-1A0A075B6N2 111 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TRAV12-2A0A075B6T6 113 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 A0A087WWC5 75 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TRAV8-1A0A0A6YYK1 113 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TRAV13-1A0A0B4J241 112 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 IGHV5-51A0A0C4DH38 117 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 IGHV1-58A0A0C4DH39 117 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 IGHV3-64DA0A0J9YX35 117 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 C3orf85A0A1B0GTC6 90 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TMEM235A6NFC5 223 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TLCD2A6NGC4 264 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 H3BRM9 83 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 M0R129 80 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 M0R1X1 148 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 LGALS9O00182 355 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 ANGPTL7O43827 346 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TRGC2P03986 189 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 SLC25A5P05141 298 aaKnown RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 PYYP10082 97 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 NFYAP23511 347 aaPredicted RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 POLR2JP52435 117 aaKnown RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 GABARAPL2P60520 117 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 ABCA11PQ4W5N1 156 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 Q56UQ5 140 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 SPRNQ5BIV9 151 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 BVES-AS1Q5T3Y7 98 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 C9orf153Q5TBE3 101 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 SLC25A34Q6PIV7 304 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 KRTAP5-2Q701N4 177 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 LINC00305Q7Z4B0 112 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 KTN1-AS1Q86SY8 53 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 C1orf174Q8IYL3 243 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 RPP25LQ8N5L8 163 aaKnown RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 Q8N976 141 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TMEM75Q8N9X5 138 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 VSTM2AQ8TAG5 236 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 ZNF721Q8TF20 911 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 DCANP1Q8TF63 244 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 BRK1Q8WUW1 75 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 MUCL1Q96DR8 90 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 GNPNAT1Q96EK6 184 aaPredicted RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 S100A16Q96FQ6 103 aaKnown RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 C18orf15Q96N68 181 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 AQP10Q96PS8 301 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TMEM243Q9BU79 118 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 COMMD5Q9GZQ3 224 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 C11orf68Q9H3H3 251 aaKnown RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 NAA60Q9H7X0 242 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 ST20Q9HBF5 79 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 TAAR3PQ9P1P4 343 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 AK3Q9UIJ7 227 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 LINC00527Q9UJ94 153 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 MYH4Q9Y623 1939 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 DIP2AQ14689 1571 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 LTBP1Q14766 1721 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 SCN2AQ99250 2005 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 PLIN4Q96Q06 1357 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 ABCC3O15438 1527 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 MEGF6O75095 1541 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 CUX1P39880 1505 aa2.22□□□□□ -2.05
CD44-229ENST00000528672 CDK13Q14004 1512 aaKnown RBP2.22□□□□□ -2.05
CD44-229ENST00000528672 NCOA2Q15596 1464 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 SHROOM2Q13796 1616 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 TRPM1Q7Z4N2 1603 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 STRCQ7RTU9 1775 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 TRAV8-3A0A0A6YYJ7 113 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 TRAV41A0A0B4J266 112 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 CCL15-CCL14A0A0B4J2E2 113 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 C4orf51C9J302 202 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 C11orf94C9JXX5 98 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 H3BMG7 143 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 M0R378 163 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 PSPHP1O15172 72 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 PITX3O75364 302 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 TRBV12-3P01733 135 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 LINC00869P0C866 280 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 GLI3P10071 1580 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 HLA-DMBP28068 263 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 SDC2P34741 201 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 CA7P43166 264 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 PSMB2P49721 201 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 BLMP54132 1417 aaPredicted RBP2.21□□□□□ -2.06
CD44-229ENST00000528672 CCL23P55773 120 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 MP68P56378 58 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 SEC11AP67812 179 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 ADIRFQ15847 76 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 HES3Q5TGS1 186 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 MDP1Q86V88 176 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 ZNF584Q8IVC4 421 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 MKXQ8IYA7 352 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 RNF182Q8N6D2 247 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 OR1J4Q8NGS1 313 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 OR51H1Q8NH63 302 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 SCGB1C1Q8TD33 95 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 KCNS1Q96KK3 526 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 OR2A5Q96R48 311 aa2.21□□□□□ -2.06
CD44-229ENST00000528672 CAMK2N2Q96S95 79 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms