RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 NAT8BQ9UHF3 227 aa9.52□□□□□ -0.89
NUP54-202ENST00000502850 TBL2Q9Y4P3 447 aaKnown RBP9.52□□□□□ -0.89
NUP54-202ENST00000502850 TOMM40O96008 361 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 APELAP0DMC3 54 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 DEFA6Q01524 100 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 HES1Q14469 280 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 ATP5L2Q7Z4Y8 100 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 BLNKQ8WV28 456 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 SLC25A39Q9BZJ4 359 aaPredicted RBP9.51□□□□□ -0.89
NUP54-202ENST00000502850 THYN1Q9P016 225 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 ZNF492Q9P255 531 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 HILPDAQ9Y5L2 63 aa9.51□□□□□ -0.89
NUP54-202ENST00000502850 SOX21Q9Y651 276 aaPredicted RBP9.51□□□□□ -0.89
NUP54-202ENST00000502850 TRBV6-1A0A0K0K1D8 114 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 A6NNC1 897 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 COL8A1P27658 744 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 PRB3Q04118 309 aaPredicted RBP9.5□□□□□ -0.89
NUP54-202ENST00000502850 ZNF562Q6V9R5 426 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 ZNF600Q6ZNG1 722 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 TMEM136Q6ZRR5 245 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 VMO1Q7Z5L0 202 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 BAGE3Q86Y29 109 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 BPIFA4PQ86YQ2 179 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 LYPD1Q8N2G4 141 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 OR4F17Q8NGA8 305 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 IGFBPL1Q8WX77 278 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 ARPC1AQ92747 370 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 MBD6Q96DN6 1003 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 Q9H3A6 140 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 C1RLQ9NZP8 487 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 DOPEY1Q5JWR5 2465 aa9.5□□□□□ -0.89
NUP54-202ENST00000502850 TRAV20A0A0B4J274 112 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 K7EIM0 57 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 LY6HO94772 140 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 TCRAP04437 139 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 EFNA4P52798 201 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 EBI3Q14213 229 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 CDPF1Q6NVV7 123 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 TSKUQ8WUA8 353 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 MS4A10Q96PG2 267 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 MRPL27Q9P0M9 148 aaKnown RBP9.49□□□□□ -0.89
NUP54-202ENST00000502850 IGHV3-21A0A0B4J1V1 117 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 H3BRN7 92 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 K7EQM0 130 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 LTAP01374 205 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 MFAP4P55083 255 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 RAB4BP61018 213 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 KLRD1Q13241 179 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 LDLRAD2Q5SZI1 272 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 C19orf35Q6ZS72 473 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 NUDT10Q8NFP7 164 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 NUDT11Q96G61 164 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 SHANK2-AS3Q9BTD1 123 aa9.49□□□□□ -0.89
NUP54-202ENST00000502850 GRIFINA4D1Z8 144 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 A8MWL6 223 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 GNG7O60262 68 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 GOSR1O95249 250 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 IGKV1-17P01599 117 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 HOXB4P17483 251 aaPredicted RBP9.48□□□□□ -0.89
NUP54-202ENST00000502850 DDTP30046 118 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 BRS3P32247 399 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 TCL1AP56279 114 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 GNG5P63218 68 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 RUSC1-AS1Q66K80 236 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 LHFPL4Q7Z7J7 247 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 TMEM256Q8N2U0 113 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 TTC9CQ8N5M4 171 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 Q8N6K4 173 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 NHLRC2Q8NBF2 726 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 DAZAP1Q96EP5 407 aaKnown RBP9.48□□□□□ -0.89
NUP54-202ENST00000502850 RNF125Q96EQ8 232 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 LINC00479Q96M42 142 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 GFRA4Q9GZZ7 299 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 RPP21Q9H633 154 aaKnown RBP9.48□□□□□ -0.89
NUP54-202ENST00000502850 C7orf69Q9H7B7 122 aa9.48□□□□□ -0.89
NUP54-202ENST00000502850 IGLV11-55A0A075B6I3 123 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 TRAV34A0A0B4J273 112 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 IGHV2-70DA0A0C4DH43 119 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 FAM231BA6NCW3 169 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 APCSP02743 223 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 FAM106CPP0CH98 169 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 PAX1P15863 534 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 TMEM11P17152 192 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 PDE6HQ13956 83 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 C9orf152Q5JTZ5 239 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 PRR27Q6MZM9 219 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 MRPL54Q6P161 138 aaKnown RBP9.47□□□□□ -0.89
NUP54-202ENST00000502850 OR4B1Q8NGF8 309 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 MLST8Q9BVC4 326 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 SAMD10Q9BYL1 202 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 SIRPDQ9H106 197 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 UBTD1Q9HAC8 227 aa9.47□□□□□ -0.89
NUP54-202ENST00000502850 SERTM2A0A1B0GWG4 89 aa9.46□□□□□ -0.89
NUP54-202ENST00000502850 PLXNB1O43157 2135 aa9.46□□□□□ -0.89
NUP54-202ENST00000502850 SERF1AO75920 110 aa9.46□□□□□ -0.89
NUP54-202ENST00000502850 SCGB1D1O95968 90 aa9.46□□□□□ -0.89
NUP54-202ENST00000502850 P01737 135 aa9.46□□□□□ -0.89
NUP54-202ENST00000502850 UBE2E1P51965 193 aa9.46□□□□□ -0.89
NUP54-202ENST00000502850 FAM209BQ5JX69 171 aa9.46□□□□□ -0.89
NUP54-202ENST00000502850 FAM162BQ5T6X4 162 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms