RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ZNF586Q9NXT0 402 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 KLF12Q9Y4X4 402 aa16.58■□□□□ 0.25
CCDC88B-208ENST00000492980 IGHV4-61A0A0C4DH41 118 aa16.58■□□□□ 0.24
CCDC88B-208ENST00000492980 WI2-2373I1.2A0A1W2PRP0 233 aa16.58■□□□□ 0.24
CCDC88B-208ENST00000492980 FABP4P15090 132 aa16.58■□□□□ 0.24
CCDC88B-208ENST00000492980 C10orf105Q8TEF2 133 aa16.58■□□□□ 0.24
CCDC88B-208ENST00000492980 HSPB9Q9BQS6 159 aa16.58■□□□□ 0.24
CCDC88B-208ENST00000492980 ABCA2Q9BZC7 2435 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 NDUFB8O95169 186 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 IL4P05112 153 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 HIST1H1EP10412 219 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 PAX8Q06710 450 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 TMEM68Q96MH6 324 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 HIST1H2BLQ99880 126 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 ATG101Q9BSB4 218 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 UBE2G1P62253 170 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 PYY3Q5JQD4 70 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 C21orf62Q9NYP8 219 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 THYN1Q9P016 225 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 RPH3ALQ9UNE2 315 aa16.57■□□□□ 0.24
CCDC88B-208ENST00000492980 VWC2LB2RUY7 222 aa16.56■□□□□ 0.24
CCDC88B-208ENST00000492980 CBLN1P23435 193 aa16.56■□□□□ 0.24
CCDC88B-208ENST00000492980 FAM231DQ6ZW35 169 aa16.56■□□□□ 0.24
CCDC88B-208ENST00000492980 ACACBO00763 2458 aa16.56■□□□□ 0.24
CCDC88B-208ENST00000492980 OR2J3O76001 311 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 Q56UQ5 140 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 C7orf69Q9H7B7 122 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 OTORQ9NRC9 128 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 ZNF705GA8MUZ8 300 aaPredicted RBP16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 TCRAP04437 139 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 FRMD6-AS1P0C7T7 363 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 ADMP35318 185 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 SERTAD4Q9NUC0 356 aa16.55■□□□□ 0.24
CCDC88B-208ENST00000492980 DOPEY1Q5JWR5 2465 aa16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 SMIM27A0A1W2PRY6 76 aa16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 NDUFS8O00217 210 aa16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 USF2Q15853 346 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 BPIFA4PQ86YQ2 179 aa16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 SGK494Q96LW2 274 aa16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 TCL1AP56279 114 aa16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 SMIM12Q96EX1 92 aa16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 PACRGQ96M98 296 aaPredicted RBP16.54■□□□□ 0.24
CCDC88B-208ENST00000492980 IGHV3-23P01764 117 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 IER3P46695 156 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 ATP5J2P56134 94 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 S100A12P80511 92 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 FAM110DQ8TAY7 271 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 MBD6Q96DN6 1003 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 FMC1Q96HJ9 113 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 SPOCK3Q9BQ16 436 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 FBXL7Q9UJT9 491 aa16.53■□□□□ 0.24
CCDC88B-208ENST00000492980 CA1P00915 261 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-208ENST00000492980 AMBPP02760 352 aa16.52■□□□□ 0.24
CCDC88B-208ENST00000492980 IGLC2P0DOY2 106 aa16.52■□□□□ 0.24
CCDC88B-208ENST00000492980 CLEC2AQ6UVW9 174 aa16.52■□□□□ 0.24
CCDC88B-208ENST00000492980 BCL6BQ8N143 479 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-208ENST00000492980 GPR82Q96P67 336 aa16.52■□□□□ 0.24
CCDC88B-208ENST00000492980 MRPL18Q9H0U6 180 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-208ENST00000492980 TRBV19A0A075B6N1 114 aa16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 MRPS12O15235 138 aaKnown RBP16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 ATP6V0E1O15342 81 aa16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 FCGR2BP31994 310 aaPredicted RBP16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 EXOC3-AS1Q8N2X6 119 aa16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 NUDT10Q8NFP7 164 aa16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 OR4F17Q8NGA8 305 aa16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 NUDT11Q96G61 164 aa16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 MLST8Q9BVC4 326 aa16.52■□□□□ 0.23
CCDC88B-208ENST00000492980 SPTAN1Q13813 2472 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 CSMD1Q96PZ7 3565 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 IGHV3OR16-10A0A075B7F0 116 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 TRBV9A0A0B4J1U6 114 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 GATCO43716 136 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 LTAP01374 205 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 ECSCRQ19T08 205 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 PRR27Q6MZM9 219 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 UNQ5815/PRO19632Q6UWF5 114 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 TMUB1Q9BVT8 246 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 IGHV4-30-2A0A087WSY4 118 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 IGHV1-69DA0A0B4J2H0 117 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 OR2T8A6NH00 312 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 SPINK4O60575 86 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 IGHV1-69P01742 117 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 C17orf77Q96MU5 243 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 GNB1LQ9BYB4 327 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 RNF24Q9Y225 148 aa16.51■□□□□ 0.23
CCDC88B-208ENST00000492980 SNURFLB1AK76 121 aa16.5■□□□□ 0.23
CCDC88B-208ENST00000492980 RPL19P84098 196 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-208ENST00000492980 KLK9Q2XQG4 91 aa16.5■□□□□ 0.23
CCDC88B-208ENST00000492980 KLK9Q9UKQ9 250 aa16.5■□□□□ 0.23
CCDC88B-208ENST00000492980 FLNCQ14315 2725 aa16.5■□□□□ 0.23
CCDC88B-208ENST00000492980 SVEP1Q4LDE5 3571 aa16.5■□□□□ 0.23
CCDC88B-208ENST00000492980 PRB1P04280 392 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 CTSGP08311 255 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 SLC35B1P78383 322 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 C5orf56Q8N8D9 126 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 VN1R17PQ8TDU5 208 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 GRAMD2BQ96HH9 432 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 TXN2Q99757 166 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 GSN-AS1Q9NRJ2 163 aa16.49■□□□□ 0.23
CCDC88B-208ENST00000492980 COL12A1Q99715 3063 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms