RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 IGLV1-44P01699 117 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 Q0VG73 95 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 DMRTC2Q8IXT2 367 aaPredicted RBP9□□□□□ -0.97
HDAC6-228ENST00000486227 MTURNQ8N3F0 131 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 PLA2G2EQ9NZK7 142 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 MRPS16Q9Y3D3 137 aaKnown RBP9□□□□□ -0.97
HDAC6-228ENST00000486227 A0A1W2PRE2 83 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 HIST1H1AQ02539 215 aaPredicted RBP9□□□□□ -0.97
HDAC6-228ENST00000486227 TWIST1Q15672 202 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 EFNB3Q15768 340 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 Q1RN00 199 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 NCOR2Q9Y618 2525 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 HIGD1CA8MV81 97 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 ITGB1BP1O14713 200 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 SMIM13P0DJ93 91 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 SCGB1D4Q6XE38 83 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 SLC25A48Q6ZT89 311 aaKnown RBP9□□□□□ -0.97
HDAC6-228ENST00000486227 MYOZ3Q8TDC0 251 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 NUDT11Q96G61 164 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 NEU1Q99519 415 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 GGTLC1Q9BX51 225 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 COX11Q9Y6N1 276 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 PAX9P55771 341 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 CLEC19AQ6UXS0 136 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 SYT8Q8NBV8 401 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 SPCS1Q9Y6A9 102 aa9□□□□□ -0.97
HDAC6-228ENST00000486227 PYYP10082 97 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 CKS2P33552 79 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 DUX4L9Q6RFH8 374 aaPredicted RBP8.99□□□□□ -0.97
HDAC6-228ENST00000486227 LINC01356Q8N9X3 169 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 ZNF257Q9Y2Q1 563 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 TCRBV4S1A1TA0A5B7 111 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 SRD5A1P18405 259 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 Q5PR19 223 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 MEGF9Q9H1U4 602 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 RPP21Q9H633 154 aaKnown RBP8.99□□□□□ -0.97
HDAC6-228ENST00000486227 OOSP1A8MZH6 123 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 RNF223E7ERA6 249 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 IGKV1-16P04430 117 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 SEC11AP67812 179 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 PRSS8Q16651 343 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 PSMG4Q5JS54 123 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 SAMD13Q5VXD3 122 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 C11orf44Q8N8P7 122 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 IGHV1-3A0A0C4DH29 117 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 A0A1B0GUS0 222 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 SNCGO76070 127 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 ZNF726P1Q15940 193 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 MINOS1Q5TGZ0 78 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 AMMECR1LQ6DCA0 310 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 VMO1Q7Z5L0 202 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 MRPL27Q9P0M9 148 aaKnown RBP8.99□□□□□ -0.97
HDAC6-228ENST00000486227 MINOS1-NBL1R4GNA1 71 aa8.99□□□□□ -0.97
HDAC6-228ENST00000486227 KIR2DL5BA0A0G2JN68 375 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 KIR2DL5BA0A0G2JPC4 375 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 FOXI3A8MTJ6 420 aaPredicted RBP8.98□□□□□ -0.97
HDAC6-228ENST00000486227 H0YJW9 148 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 CX3CL1P78423 397 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 SMAGPQ0VAQ4 97 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 RASL11AQ6T310 242 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 KIR2DL5AQ8N109 375 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 JKAMPQ9P055 326 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 PIEZO2Q9H5I5 2752 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 C7orf71A4D174 169 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 FAM181BA6NEQ2 426 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 NUDT10Q8NFP7 164 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 ZNF414Q96IQ9 312 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 F11RQ9Y624 299 aaKnown RBP8.98□□□□□ -0.97
HDAC6-228ENST00000486227 PTPN13Q12923 2485 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 H3BUT2 72 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 SNAI2O43623 268 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 IGKV3-20P01619 116 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 YPEL3P61236 119 aaPredicted RBP8.98□□□□□ -0.97
HDAC6-228ENST00000486227 SRSF9Q13242 221 aaKnown RBP eCLIP8.98□□□□□ -0.97
HDAC6-228ENST00000486227 TMEM155Q4W5P6 130 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 C5orf30Q96GV9 206 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 MS4A6AQ9H2W1 248 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 MOB4Q9Y3A3 225 aa8.98□□□□□ -0.97
HDAC6-228ENST00000486227 APOHP02749 345 aaPredicted RBP8.97□□□□□ -0.97
HDAC6-228ENST00000486227 IGFL2Q6UWQ7 119 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 Q6ZWC4 215 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 LYPD6Q86Y78 171 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 CHCHD1Q96BP2 118 aaKnown RBP8.97□□□□□ -0.97
HDAC6-228ENST00000486227 CYYR1Q96J86 154 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 PYGO2Q9BRQ0 406 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 DENND4AQ7Z401 1863 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 PCNX3Q9H6A9 2034 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 TMEM238LA0A1B0GVL6 79 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 A6NJY4 79 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 C15orf62A8K5M9 175 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 M0R1W7 72 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 C2orf83Q53S99 150 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 LCN12Q6JVE5 192 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 BRD3OSQ6XYD6 125 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 ATP5L2Q7Z4Y8 100 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 LHFPL4Q7Z7J7 247 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 TMEM167AQ8TBQ9 72 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 GPR82Q96P67 336 aa8.97□□□□□ -0.97
HDAC6-228ENST00000486227 SSBP4Q9BWG4 385 aaPredicted RBP8.97□□□□□ -0.97
HDAC6-228ENST00000486227 LINC00527Q9UJ94 153 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms