RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 TRAPPC2P0DI81 140 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 TRAPPC2BP0DI82 140 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 ETV6P41212 452 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 ZNF90Q03938 601 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 ATP5G2Q06055 141 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 TDRG1Q3Y452 100 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 ZNF880Q6PDB4 577 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 AMTNQ6UX39 209 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 C2orf66Q6UXQ4 117 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 TMEM91Q6ZNR0 172 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 TEN1Q86WV5 123 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 ZNF101Q8IZC7 436 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 OR10G2Q8NGC3 310 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 OTOSQ8NHW6 89 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 C15orf40Q8WUR7 153 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 GTSF1Q8WW33 167 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 VGLL1Q99990 258 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 SHANK2-AS3Q9BTD1 123 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 DPY30Q9C005 99 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 ATG5Q9H1Y0 275 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 NPVFQ9HCQ7 196 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 SAR1AQ9NR31 198 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 KLK5Q9Y337 293 aaPredicted RBP2.87□□□□□ -1.95
VPS41-212ENST00000482217 DNAJC15Q9Y5T4 150 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 ROBO1Q9Y6N7 1651 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 MYH1P12882 1939 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 SPHKAPQ2M3C7 1700 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 PTPRBP23467 1997 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 COL18A1P39060 1754 aa2.87□□□□□ -1.95
VPS41-212ENST00000482217 SBF2Q86WG5 1849 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 POLA1P09884 1462 aaPredicted RBP2.86□□□□□ -1.95
VPS41-212ENST00000482217 RER1O15258 196 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 NDUFB3O43676 98 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 SYNGR2O43760 224 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 HRASP01112 189 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 ZNF14P17017 642 aaPredicted RBP2.86□□□□□ -1.95
VPS41-212ENST00000482217 SRP14P37108 136 aaKnown RBP2.86□□□□□ -1.95
VPS41-212ENST00000482217 NUDT2P50583 147 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 EBI3Q14213 229 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 FAM104BQ5XKR9 115 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 GUSBP11Q6P575 273 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 MORN3Q6PF18 240 aaPredicted RBP2.86□□□□□ -1.95
VPS41-212ENST00000482217 ALKAL2Q6UX46 152 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 TIFABQ6ZNK6 161 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 TMEM183AQ8IXX5 376 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 SVBPQ8N300 66 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP2.86□□□□□ -1.95
VPS41-212ENST00000482217 MAPK1IP1LQ8NDC0 245 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 MORN4Q8NDC4 146 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 OR10P1Q8NGE3 313 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 LINC00526Q96FQ7 95 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 ZNF414Q96IQ9 312 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 TTTY13Q9BZ97 58 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 MAPKBP1O60336 1514 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 ARHGAP5Q13017 1502 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 ABCA10Q8WWZ4 1543 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 MROH2BQ7Z745 1585 aa2.86□□□□□ -1.95
VPS41-212ENST00000482217 SNRNP200O75643 2136 aaKnown RBP2.86□□□□□ -1.95
VPS41-212ENST00000482217 PIK3C2AO00443 1686 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 ERVK-7P63135 1459 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 TRBV20-1A0A075B6N2 111 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 IGHV1OR15-9A0A0B4J2B8 117 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 GRIFINA4D1Z8 144 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 COLCA2A8K830 154 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 H3BQ15 152 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 OR1I1O60431 355 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 IGLV3-25P01717 112 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 IGHV3-11P01762 117 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 NMBP08949 121 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 TRGC1P0CF51 173 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 CXCL5P42830 114 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 CSN1S1P47710 185 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 LUZP6Q538Z0 58 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 KHDC3LQ587J8 217 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 RNASE13Q5GAN3 156 aaKnown RBP2.85□□□□□ -1.95
VPS41-212ENST00000482217 BPIFA4PQ86YQ2 179 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 ORMDL3Q8N138 153 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 HIST3H2BBQ8N257 126 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 C20orf203Q8NBC4 194 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 BPIFB6Q8NFQ5 453 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 ITLN2Q8WWU7 325 aaPredicted RBP2.85□□□□□ -1.95
VPS41-212ENST00000482217 RBMXL1Q96E39 390 aaKnown RBP2.85□□□□□ -1.95
VPS41-212ENST00000482217 PRELID3AQ96N28 172 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 SMIM14Q96QK8 99 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 LINC00597Q9H2U6 94 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 ADGRB1O14514 1584 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 ANK1P16157 1881 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 DOCK1Q14185 1865 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 CRB1P82279 1406 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 UACAQ9BZF9 1416 aa2.85□□□□□ -1.95
VPS41-212ENST00000482217 KIDINS220Q9ULH0 1771 aa2.84□□□□□ -1.95
VPS41-212ENST00000482217 FANCAO15360 1455 aa2.84□□□□□ -1.95
VPS41-212ENST00000482217 COL1A1P02452 1464 aaPredicted RBP2.84□□□□□ -1.95
VPS41-212ENST00000482217 PLEKHH2Q8IVE3 1493 aa2.84□□□□□ -1.95
VPS41-212ENST00000482217 GPATCH8Q9UKJ3 1502 aaKnown RBP2.84□□□□□ -1.95
VPS41-212ENST00000482217 MYH4Q9Y623 1939 aa2.84□□□□□ -1.95
VPS41-212ENST00000482217 RIMBP3CA6NJZ7 1639 aa2.84□□□□□ -1.95
VPS41-212ENST00000482217 RIMBP3BA6NNM3 1639 aa2.84□□□□□ -1.95
VPS41-212ENST00000482217 RIMBP3Q9UFD9 1639 aa2.84□□□□□ -1.95
VPS41-212ENST00000482217 LOC107986453A0A1B0GWG9 222 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms