RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 LOXL1Q08397 574 aaPredicted RBP15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 HCP5Q6MZN7 132 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 TANC2Q9HCD6 1990 aa15.1■□□□□ 0.01
CCDC88B-207ENST00000479965 MYCNOSP40205 109 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 IFI27P40305 119 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 WFDC3Q8IUB2 231 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 VSTM2AQ8TAG5 236 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 IGKV1D-37A0A075B6S9 117 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 IGKV3-15P01624 115 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 CR1LQ2VPA4 569 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 GOLT1AQ6ZVE7 132 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 MAFAQ8NHW3 353 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 FMC1Q96HJ9 113 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 MRPL20Q9BYC9 149 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 NDUFA4L2Q9NRX3 87 aa15.09■□□□□ 0.01
CCDC88B-207ENST00000479965 INTS1Q8N201 2190 aaKnown RBP15.08■□□□□ 0.01
CCDC88B-207ENST00000479965 SMAGPQ0VAQ4 97 aa15.08■□□□□ 0.01
CCDC88B-207ENST00000479965 RUSC1-AS1Q66K80 236 aa15.08■□□□□ 0.01
CCDC88B-207ENST00000479965 Q6ZT83 130 aa15.08■□□□□ 0.01
CCDC88B-207ENST00000479965 CCL13Q99616 98 aa15.08■□□□□ 0.01
CCDC88B-207ENST00000479965 LTAP01374 205 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 FGF6P10767 208 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 RBPJQ06330 500 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 KLF12Q9Y4X4 402 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 CFAP47Q6ZTR5 3102 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 A0A1B0GUT8 65 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 CFHR2P36980 270 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 CT83Q5H943 113 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 PMS2CLQ68D20 193 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 NPFFR1Q9GZQ6 430 aa15.08■□□□□ 0
CCDC88B-207ENST00000479965 MUC3AQ02505 3323 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 CGB3P0DN86 165 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 CGB7P0DN87 165 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 Q5PR19 223 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 PCP2Q8IVA1 136 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 EXOC3-AS1Q8N2X6 119 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 FAM216BQ8N7L0 139 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 ROS1P08922 2347 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 A0A1W2PPM0 123 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 FSTL3O95633 263 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 LGALS7P47929 136 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 MZT1Q08AG7 82 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 MSMPQ1L6U9 139 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 STXBP6Q8NFX7 210 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 SIT1Q9Y3P8 196 aa15.07■□□□□ 0
CCDC88B-207ENST00000479965 ZNF207O43670 478 aaKnown RBP15.06■□□□□ 0
CCDC88B-207ENST00000479965 FABP2P12104 132 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 ATP5IP56385 69 aaPredicted RBP15.06■□□□□ 0
CCDC88B-207ENST00000479965 NEGR1Q7Z3B1 354 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 RAB9BQ9NP90 201 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 DSCAMO60469 2012 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 HSD52Q0P140 79 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 LPAL2Q16609 132 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 TEX48A0A1B0GUV7 120 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 HAX1O00165 279 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 GFRA4Q9GZZ7 299 aa15.06■□□□□ 0
CCDC88B-207ENST00000479965 PPIAL4CA0A0B4J2A2 164 aa15.05■□□□□ -0
CCDC88B-207ENST00000479965 SMAD7O15105 426 aaKnown RBP15.05■□□□□ -0
CCDC88B-207ENST00000479965 PPIAL4GP0DN37 164 aa15.05■□□□□ -0
CCDC88B-207ENST00000479965 GCSHP23434 173 aa15.05■□□□□ -0
CCDC88B-207ENST00000479965 SUB1P53999 127 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC88B-207ENST00000479965 ZADH2Q8N4Q0 377 aa15.05■□□□□ -0
CCDC88B-207ENST00000479965 OR5AN1Q8NGI8 311 aa15.05■□□□□ -0
CCDC88B-207ENST00000479965 ZNF492Q9P255 531 aa15.05■□□□□ -0
CCDC88B-207ENST00000479965 MAP1BP46821 2468 aaKnown RBP15.05■□□□□ -0
CCDC88B-207ENST00000479965 TMSB15BA0A087X1C1 80 aa15.05■□□□□ -0
CCDC88B-207ENST00000479965 IGHV1-18A0A0C4DH31 117 aa15.04■□□□□ -0
CCDC88B-207ENST00000479965 C22orf46C9J442 243 aa15.04■□□□□ -0
CCDC88B-207ENST00000479965 ATP1A1-AS1Q5TC04 95 aa15.04■□□□□ -0
CCDC88B-207ENST00000479965 AZU1P20160 251 aa15.04■□□□□ -0
CCDC88B-207ENST00000479965 RIGQ13278 110 aa15.04■□□□□ -0
CCDC88B-207ENST00000479965 Q86TA4 180 aa15.04■□□□□ -0
CCDC88B-207ENST00000479965 SMG1Q96Q15 3661 aaKnown RBP15.04■□□□□ -0
CCDC88B-207ENST00000479965 SAMD5Q5TGI4 173 aa15.03■□□□□ -0
CCDC88B-207ENST00000479965 BOD1L2Q8IYS8 172 aa15.03■□□□□ -0
CCDC88B-207ENST00000479965 PIP4P2Q8N4L2 257 aa15.03■□□□□ -0
CCDC88B-207ENST00000479965 C9orf172C9J069 976 aa15.03■□□□□ -0
CCDC88B-207ENST00000479965 D6R8Y8 96 aa15.03■□□□□ -0
CCDC88B-207ENST00000479965 SLC25A48Q6ZT89 311 aaKnown RBP15.03■□□□□ -0
CCDC88B-207ENST00000479965 OR5A1Q8NGJ0 315 aa15.03■□□□□ -0
CCDC88B-207ENST00000479965 LYZP61626 148 aa15.02■□□□□ -0
CCDC88B-207ENST00000479965 OSR1Q8TAX0 266 aaPredicted RBP15.02■□□□□ -0
CCDC88B-207ENST00000479965 SLC25A17O43808 307 aa15.02□□□□□ -0.01
CCDC88B-207ENST00000479965 DIAPH2-AS1Q14236 149 aa15.02□□□□□ -0.01
CCDC88B-207ENST00000479965 TIMM23BQ5SRD1 257 aa15.02□□□□□ -0.01
CCDC88B-207ENST00000479965 INSIG2Q9Y5U4 225 aa15.02□□□□□ -0.01
CCDC88B-207ENST00000479965 PLCE1Q9P212 2302 aa15.02□□□□□ -0.01
CCDC88B-207ENST00000479965 K7EMI3 77 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 MBNL2Q5VZF2 373 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 DHRS13Q6UX07 377 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 TTTY13Q9BZ97 58 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 TPSG1Q9NRR2 321 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 RPUSD1Q9UJJ7 312 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 K7ERJ3 54 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 ZNF414Q96IQ9 312 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 C18orf15Q96N68 181 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 ZDBF2Q9HCK1 2354 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 A0A096LNJ9 63 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 CGB1A6NKQ9 187 aa15.01□□□□□ -0.01
CCDC88B-207ENST00000479965 FCGR2BP31994 310 aaPredicted RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms