RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 TCTAP57738 103 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 POLR2GP62487 172 aaKnown RBP eCLIP8.75□□□□□ -1.01
SYNE1-223ENST00000476519 SPATA31B1PQ5VZV4 182 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 TMEM144Q7Z5S9 345 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 BPIFCQ8NFQ6 507 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 OR4D5Q8NGN0 318 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 MITD1Q8WV92 249 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 LINC00052Q96N35 136 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 CLUHP3Q96NS8 147 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 WDR12Q9GZL7 423 aaKnown RBP8.75□□□□□ -1.01
SYNE1-223ENST00000476519 PSENENQ9NZ42 101 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 HLA-DRB4X5D2U9 266 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 KMT2AQ03164 3969 aa8.75□□□□□ -1.01
SYNE1-223ENST00000476519 IGHV4-28A0A0C4DH34 117 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 C11orf94C9JXX5 98 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 ISLRO14498 428 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 DEFB4AO15263 64 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 RBMY1A1P0DJD3 496 aaKnown RBP8.74□□□□□ -1.01
SYNE1-223ENST00000476519 RBMY1CP0DJD4 496 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 BTCP35070 178 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 GALR1P47211 349 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 MEOX2P50222 304 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 RBMY1FQ15415 496 aaKnown RBP8.74□□□□□ -1.01
SYNE1-223ENST00000476519 FOXI2Q6ZQN5 318 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 C2CD4CQ8TF44 421 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 SAV1Q9H4B6 383 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-223ENST00000476519 X6R8D5 127 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 VPS13DQ5THJ4 4388 aa8.74□□□□□ -1.01
SYNE1-223ENST00000476519 ZNF98A6NK75 572 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 FNDC10F2Z333 226 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 H3BP45 60 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 SOCS3O14543 225 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 PLA2G10O15496 165 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 ORM2P19652 201 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 TAS2R30P59541 319 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 AKR1C1Q04828 323 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 LGALS9CQ6DKI2 356 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 ACOT7LQ6ZUV0 252 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 OR1B1Q8NGR6 318 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 GPR82Q96P67 336 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 TMEM147Q9BVK8 224 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 CLEC5AQ9NY25 188 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 XCL2Q9UBD3 114 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 AGRNO00468 2067 aa8.73□□□□□ -1.01
SYNE1-223ENST00000476519 SMIM9A6NGZ8 99 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 PMS2P5A8MQ11 134 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 SSSCA1O60232 199 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 TSC22D2O75157 780 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 IL5P05113 134 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 GATA2P23769 480 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-223ENST00000476519 PAX9P55771 341 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 SELENOTP62341 195 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 IAH1Q2TAA2 248 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-223ENST00000476519 EBLN2Q6P2I7 272 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 TMEM14EPQ6UXP3 125 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 TMEM182Q6ZP80 229 aaPredicted RBP8.72□□□□□ -1.01
SYNE1-223ENST00000476519 LINC00299Q6ZSB3 139 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 S100A7AQ86SG5 101 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 NEU1Q99519 415 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 RSG1Q9BU20 258 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 NPVFQ9HCQ7 196 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 GSKIPQ9P0R6 139 aa8.72□□□□□ -1.01
SYNE1-223ENST00000476519 ELOA3CA0A087WX78 387 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-223ENST00000476519 LYRM1O43325 122 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 HYPMO75409 117 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 HLA-DMBP28068 263 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 PLP1P60201 277 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 DLK1P80370 383 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 GDF5OSQ5U4N7 250 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 ZNF705AQ6ZN79 300 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-223ENST00000476519 CYP2G1PQ6ZSU1 146 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 ZBTB8BQ8NAP8 495 aaPredicted RBP8.71□□□□□ -1.02
SYNE1-223ENST00000476519 OR10P1Q8NGE3 313 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 C16orf92Q96LL3 132 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 CCDC32Q9BV29 185 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 GGACTQ9BVM4 153 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 SLC25A32Q9H2D1 315 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 SLC25A22Q9H936 323 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 RPRMQ9NS64 109 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 RNF24Q9Y225 148 aa8.71□□□□□ -1.02
SYNE1-223ENST00000476519 DNAH10Q8IVF4 4471 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 SMCO3A2RU48 225 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 K7EPK0 472 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 DEDDO75618 318 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 TCRBP04435 133 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 METTL15P1P0C7V9 234 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 RPL7P18124 248 aaKnown RBP8.7□□□□□ -1.02
SYNE1-223ENST00000476519 RAP2BP61225 183 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 PSG9Q00887 426 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 OR4B1Q8NGF8 309 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 SHANK2-AS3Q9BTD1 123 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 SLC25A39Q9BZJ4 359 aaPredicted RBP8.7□□□□□ -1.02
SYNE1-223ENST00000476519 C20orf85Q9H1P6 137 aa8.7□□□□□ -1.02
SYNE1-223ENST00000476519 TRAV10A0A0B4J240 114 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 A0A0J9YX75 114 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 TMEM189A5PLL7 270 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 ZNF705FA8MVS1 300 aaPredicted RBP8.69□□□□□ -1.02
SYNE1-223ENST00000476519 SCGB1D2O95969 90 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 IGKV3-20P01619 116 aa8.69□□□□□ -1.02
SYNE1-223ENST00000476519 MBPP02686 304 aaPredicted RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms