RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 C8orf46Q8TAG6 207 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 C22orf15Q8WYQ4 148 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 PKD1L2Q7Z442 2459 aa15.13■□□□□ 0.01
VIM-203ENST00000469543 TRAV9-1A0A075B6T8 112 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 IQCJQ1A5X6 159 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 FAM19A2Q8N3H0 131 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 LY6G5BQ8NDX9 201 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 TBX15Q96SF7 602 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 RAB1BQ9H0U4 201 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 NAGKQ9UJ70 344 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 A0A1B0GV90 55 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 TCF24Q7RTU0 167 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 SAMD10Q9BYL1 202 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 Q9H3A6 140 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 ZNF586Q9NXT0 402 aa15.12■□□□□ 0.01
VIM-203ENST00000469543 HIGD1CA8MV81 97 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 NEU1Q99519 415 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 C7orf69Q9H7B7 122 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 DPM3Q9P2X0 92 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 GATCO43716 136 aaKnown RBP15.11■□□□□ 0.01
VIM-203ENST00000469543 ZNF253O75346 499 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 IGHV3-23P01764 117 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 PAX1P15863 534 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 ZFP36P26651 326 aaKnown RBP15.11■□□□□ 0.01
VIM-203ENST00000469543 REC114Q7Z4M0 266 aa15.11■□□□□ 0.01
VIM-203ENST00000469543 SLC25A39Q9BZJ4 359 aaPredicted RBP15.11■□□□□ 0.01
VIM-203ENST00000469543 K7EIM0 57 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 TOMM20LQ6UXN7 152 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 VN1R17PQ8TDU5 208 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 CFHR4Q92496 578 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 MBD6Q96DN6 1003 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 RASL11BQ9BPW5 248 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 LOC105371242A0A075B767 164 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 NHLH1Q02575 133 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 TMEM183BQ1AE95 376 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 AMY1AP04745 511 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 PMCHP20382 165 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 TMEM68Q96MH6 324 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 CBLN4Q9NTU7 201 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 HIGD1AQ9Y241 93 aa15.1■□□□□ 0.01
VIM-203ENST00000469543 IZUMO1RA6ND01 250 aa15.09■□□□□ 0.01
VIM-203ENST00000469543 NCBP2LA6PVI3 153 aaKnown RBP15.09■□□□□ 0.01
VIM-203ENST00000469543 CENPEQ02224 2701 aa15.09■□□□□ 0.01
VIM-203ENST00000469543 TPPP2P59282 170 aa15.09■□□□□ 0.01
VIM-203ENST00000469543 Q0VG73 95 aa15.09■□□□□ 0.01
VIM-203ENST00000469543 CIARTQ8N365 385 aaPredicted RBP15.09■□□□□ 0.01
VIM-203ENST00000469543 ZNF331Q9NQX6 463 aaPredicted RBP15.09■□□□□ 0.01
VIM-203ENST00000469543 IGHV3OR16-8A0A075B7F1 116 aa15.08■□□□□ 0
VIM-203ENST00000469543 NBR2O15453 112 aa15.08■□□□□ 0
VIM-203ENST00000469543 APCSP02743 223 aa15.08■□□□□ 0
VIM-203ENST00000469543 TCRAP04437 139 aa15.08■□□□□ 0
VIM-203ENST00000469543 C11orf71Q6IPW1 123 aa15.08■□□□□ 0
VIM-203ENST00000469543 FBXL7Q9UJT9 491 aa15.08■□□□□ 0
VIM-203ENST00000469543 A0A1W2PS18 150 aa15.08■□□□□ 0
VIM-203ENST00000469543 NDPQ00604 133 aa15.08■□□□□ 0
VIM-203ENST00000469543 TIMD4Q96H15 378 aa15.08■□□□□ 0
VIM-203ENST00000469543 GPR82Q96P67 336 aa15.08■□□□□ 0
VIM-203ENST00000469543 GPX1P07203 203 aa15.07■□□□□ 0
VIM-203ENST00000469543 KRTDAPP60985 99 aa15.07■□□□□ 0
VIM-203ENST00000469543 STXBP6Q8NFX7 210 aa15.07■□□□□ 0
VIM-203ENST00000469543 OR11H6Q8NGC7 330 aa15.07■□□□□ 0
VIM-203ENST00000469543 MLST8Q9BVC4 326 aa15.07■□□□□ 0
VIM-203ENST00000469543 ZMAT5Q9UDW3 170 aaKnown RBP15.07■□□□□ 0
VIM-203ENST00000469543 TBL2Q9Y4P3 447 aaKnown RBP15.07■□□□□ 0
VIM-203ENST00000469543 PIEZO1Q92508 2521 aa15.07■□□□□ 0
VIM-203ENST00000469543 GOLT1AQ6ZVE7 132 aa15.07■□□□□ 0
VIM-203ENST00000469543 OR2D3Q8NGH3 330 aa15.07■□□□□ 0
VIM-203ENST00000469543 GTSF1Q8WW33 167 aa15.07■□□□□ 0
VIM-203ENST00000469543 RBM14Q96PK6 669 aaKnown RBP15.07■□□□□ 0
VIM-203ENST00000469543 ATG101Q9BSB4 218 aa15.07■□□□□ 0
VIM-203ENST00000469543 KLF12Q9Y4X4 402 aa15.07■□□□□ 0
VIM-203ENST00000469543 TRBV9A0A0B4J1U6 114 aa15.06■□□□□ 0
VIM-203ENST00000469543 IGHV3-35A0A0C4DH35 117 aa15.06■□□□□ 0
VIM-203ENST00000469543 AMTP48728 403 aa15.06■□□□□ 0
VIM-203ENST00000469543 USF2Q15853 346 aaPredicted RBP15.06■□□□□ 0
VIM-203ENST00000469543 WDR73Q6P4I2 378 aa15.06■□□□□ 0
VIM-203ENST00000469543 PAM16Q9Y3D7 125 aa15.06■□□□□ 0
VIM-203ENST00000469543 IL4P05112 153 aa15.06■□□□□ 0
VIM-203ENST00000469543 VMO1Q7Z5L0 202 aa15.06■□□□□ 0
VIM-203ENST00000469543 SIGLECL1Q8N7X8 197 aa15.06■□□□□ 0
VIM-203ENST00000469543 RNF224P0DH78 156 aa15.05■□□□□ 0
VIM-203ENST00000469543 ESDP10768 282 aa15.05■□□□□ 0
VIM-203ENST00000469543 PRNTQ86SH4 94 aa15.05■□□□□ 0
VIM-203ENST00000469543 LURAP1LQ8IV03 231 aa15.05■□□□□ 0
VIM-203ENST00000469543 GRAMD2BQ96HH9 432 aa15.05■□□□□ 0
VIM-203ENST00000469543 NTF3P20783 257 aa15.05■□□□□ -0
VIM-203ENST00000469543 FCGR2BP31994 310 aaPredicted RBP15.05■□□□□ -0
VIM-203ENST00000469543 BRS3P32247 399 aa15.05■□□□□ -0
VIM-203ENST00000469543 PLP1P60201 277 aa15.05■□□□□ -0
VIM-203ENST00000469543 PAFAH1B2P68402 229 aa15.05■□□□□ -0
VIM-203ENST00000469543 FAM231DQ6ZW35 169 aa15.05■□□□□ -0
VIM-203ENST00000469543 C5orf17Q8NAS9 161 aa15.05■□□□□ -0
VIM-203ENST00000469543 MRPL27Q9P0M9 148 aaKnown RBP15.05■□□□□ -0
VIM-203ENST00000469543 M0R3E3 92 aa15.04■□□□□ -0
VIM-203ENST00000469543 EREGO14944 169 aa15.04■□□□□ -0
VIM-203ENST00000469543 MT-ND6P03923 174 aa15.04■□□□□ -0
VIM-203ENST00000469543 ZNF491Q8N8L2 437 aa15.04■□□□□ -0
VIM-203ENST00000469543 TSKUQ8WUA8 353 aa15.04■□□□□ -0
VIM-203ENST00000469543 PGLYRP4Q96LB8 373 aa15.04■□□□□ -0
VIM-203ENST00000469543 NDUFAF3Q9BU61 184 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms