RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 LY6DQ14210 128 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 HES1Q14469 280 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 OR10J3Q5JRS4 329 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 LEMD1Q68G75 181 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 UNQ6494/PRO21346Q6UXR6 183 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 Q8N6K4 173 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 ZNF48Q96MX3 618 aaPredicted RBP11.91□□□□□ -0.5
LDLR-202ENST00000455727 HIVEP3Q5T1R4 2406 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 TRAV30A0A087WSZ9 112 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 LTAP01374 205 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 TPPP2P59282 170 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 RAB4BP61018 213 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 USF2Q15853 346 aaPredicted RBP11.91□□□□□ -0.5
LDLR-202ENST00000455727 TSKUQ8WUA8 353 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 SERF1AO75920 110 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 CA1P00915 261 aaPredicted RBP11.9□□□□□ -0.5
LDLR-202ENST00000455727 CD24P25063 80 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 ZFP36P26651 326 aaKnown RBP11.9□□□□□ -0.5
LDLR-202ENST00000455727 SLC35B1P78383 322 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 BAGE3Q86Y29 109 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 MS4A10Q96PG2 267 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 SHANK2-AS3Q9BTD1 123 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 SIRPDQ9H106 197 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 ZNF331Q9NQX6 463 aaPredicted RBP11.9□□□□□ -0.5
LDLR-202ENST00000455727 ZNF586Q9NXT0 402 aa11.9□□□□□ -0.5
LDLR-202ENST00000455727 IGLV11-55A0A075B6I3 123 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 HOXB4P17483 251 aaPredicted RBP11.89□□□□□ -0.51
LDLR-202ENST00000455727 CDKN1AP38936 164 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 EFNA4P52798 201 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 MRPL54Q6P161 138 aaKnown RBP11.89□□□□□ -0.51
LDLR-202ENST00000455727 TTC9CQ8N5M4 171 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 NOL4LQ96MY1 436 aaPredicted RBP11.89□□□□□ -0.51
LDLR-202ENST00000455727 CT83Q5H943 113 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 DYNAPQ8N1N2 210 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 ZNF664Q8N3J9 261 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 ZNF491Q8N8L2 437 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 NUP35Q8NFH5 326 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 ARPC1AQ92747 370 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 FANCD2OSQ96PS1 177 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 FAM103A1Q9BTL3 118 aaKnown RBP11.89□□□□□ -0.51
LDLR-202ENST00000455727 PRSS22Q9GZN4 317 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 ZNF492Q9P255 531 aa11.89□□□□□ -0.51
LDLR-202ENST00000455727 SPTBN1Q01082 2364 aaKnown RBP11.88□□□□□ -0.51
LDLR-202ENST00000455727 TRBV6-1A0A0K0K1D8 114 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 A0A1W2PRD5 423 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 A0A1W2PRF3 423 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 A0A1W2PRM7 423 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 WI2-2373I1.2A0A1W2PRP0 233 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 H3BRN7 92 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 FBLN7Q53RD9 439 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 ASPHD1Q5U4P2 390 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 S100A7AQ86SG5 101 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 BPIFA4PQ86YQ2 179 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 GNB4Q9HAV0 340 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 TBL2Q9Y4P3 447 aaKnown RBP11.88□□□□□ -0.51
LDLR-202ENST00000455727 A8MWP6 167 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 PRR27Q6MZM9 219 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 ATP5L2Q7Z4Y8 100 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 LYPD1Q8N2G4 141 aa11.88□□□□□ -0.51
LDLR-202ENST00000455727 ITLN2Q8WWU7 325 aaPredicted RBP11.88□□□□□ -0.51
LDLR-202ENST00000455727 BMPR1BO00238 502 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 NDUFS7O75251 213 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 APCSP02743 223 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 MFAP4P55083 255 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 RNF125Q96EQ8 232 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 RPH3ALQ9UNE2 315 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 IGHV2-70DA0A0C4DH43 119 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 C19orf71A6NCJ1 209 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 IGLC2P0DOY2 106 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 BRS3P32247 399 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 IGFBPL1Q8WX77 278 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 UBTD1Q9HAC8 227 aa11.87□□□□□ -0.51
LDLR-202ENST00000455727 TRBV19A0A075B6N1 114 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 NCBP2LA6PVI3 153 aaKnown RBP11.86□□□□□ -0.51
LDLR-202ENST00000455727 H3BTX0 84 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 GNG7O60262 68 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 SCGB1D1O95968 90 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 KLF17Q5JT82 389 aaPredicted RBP11.86□□□□□ -0.51
LDLR-202ENST00000455727 OR4F17Q8NGA8 305 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 SGK494Q96LW2 274 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 NEU1Q99519 415 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 RPP21Q9H633 154 aaKnown RBP11.86□□□□□ -0.51
LDLR-202ENST00000455727 THYN1Q9P016 225 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 NAGKQ9UJ70 344 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 A0A1B0GV90 55 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 HIGD1CA8MV81 97 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 A8MWL6 223 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 F2Z2F3 143 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 UBE2E1P51965 193 aa11.86□□□□□ -0.51
LDLR-202ENST00000455727 MRPS12O15235 138 aaKnown RBP11.85□□□□□ -0.51
LDLR-202ENST00000455727 IL4P05112 153 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 TMEM11P17152 192 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 NDPQ00604 133 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 KIAA1644Q3SXP7 199 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 Q6ZWC4 215 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 Q86TA4 180 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 GFRA4Q9GZZ7 299 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 C1RLQ9NZP8 487 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 FAM231BA6NCW3 169 aa11.85□□□□□ -0.51
LDLR-202ENST00000455727 ZNF253O75346 499 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms