RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 SMIM8Q96KF7 97 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 WDR12Q9GZL7 423 aaKnown RBP8.74□□□□□ -1.01
USP40-210ENST00000454354 C20orf85Q9H1P6 137 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 VPS13DQ5THJ4 4388 aa8.74□□□□□ -1.01
USP40-210ENST00000454354 DNAH6Q9C0G6 4158 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 IGHV4-28A0A0C4DH34 117 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 PMS2P5A8MQ11 134 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 LYRM1O43325 122 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 SSSCA1O60232 199 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 ID1P41134 155 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 NANOS2P60321 138 aaKnown RBP8.73□□□□□ -1.01
USP40-210ENST00000454354 AKR1C1Q04828 323 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 SAMD13Q5VXD3 122 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 TMEM14EPQ6UXP3 125 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 TMEM144Q7Z5S9 345 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 ZBTB8BQ8NAP8 495 aaPredicted RBP8.73□□□□□ -1.01
USP40-210ENST00000454354 BPIFCQ8NFQ6 507 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 CLUHP3Q96NS8 147 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 C1QTNF4Q9BXJ3 329 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 HRH4Q9H3N8 390 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 PSENENQ9NZ42 101 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 FRAS1Q86XX4 4008 aa8.73□□□□□ -1.01
USP40-210ENST00000454354 FNDC10F2Z333 226 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 ISLRO14498 428 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 DEFB4AO15263 64 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 TSC22D2O75157 780 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 RBMY1A1P0DJD3 496 aaKnown RBP8.72□□□□□ -1.01
USP40-210ENST00000454354 RBMY1CP0DJD4 496 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 MEOX2P50222 304 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 PAX9P55771 341 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 TAS2R30P59541 319 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 NUTF2P61970 127 aaKnown RBP8.72□□□□□ -1.01
USP40-210ENST00000454354 RBMY1FQ15415 496 aaKnown RBP8.72□□□□□ -1.01
USP40-210ENST00000454354 IAH1Q2TAA2 248 aaPredicted RBP8.72□□□□□ -1.01
USP40-210ENST00000454354 GDF5OSQ5U4N7 250 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 TMEM182Q6ZP80 229 aaPredicted RBP8.72□□□□□ -1.01
USP40-210ENST00000454354 FOXI2Q6ZQN5 318 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 OR8I2Q8N0Y5 310 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 PPP1R14BQ96C90 147 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 SLC25A32Q9H2D1 315 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 SAV1Q9H4B6 383 aaPredicted RBP8.72□□□□□ -1.01
USP40-210ENST00000454354 CLEC5AQ9NY25 188 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 TBC1D24Q9ULP9 559 aa8.72□□□□□ -1.01
USP40-210ENST00000454354 RCL1Q9Y2P8 373 aaKnown RBP8.72□□□□□ -1.01
USP40-210ENST00000454354 ZNF98A6NK75 572 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 GATA2P23769 480 aaPredicted RBP8.71□□□□□ -1.02
USP40-210ENST00000454354 S100A7P31151 101 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 GALR1P47211 349 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 PLP1P60201 277 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 DLK1P80370 383 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 SPATA31B1PQ5VZV4 182 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 LINC00299Q6ZSB3 139 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 C17orf77Q96MU5 243 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 GPR82Q96P67 336 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 CCDC32Q9BV29 185 aa8.71□□□□□ -1.02
USP40-210ENST00000454354 ELOA3CA0A087WX78 387 aaPredicted RBP8.7□□□□□ -1.02
USP40-210ENST00000454354 C11orf94C9JXX5 98 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 H3BRN7 92 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 K7EPK0 472 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 CCNKO75909 580 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 LY6G6CO95867 125 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 TCRBP04435 133 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 SELENOTP62341 195 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 ZNF705AQ6ZN79 300 aaPredicted RBP8.7□□□□□ -1.02
USP40-210ENST00000454354 CYP2G1PQ6ZSU1 146 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 OR1B1Q8NGR6 318 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 TMEM147Q9BVK8 224 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 XCL2Q9UBD3 114 aa8.7□□□□□ -1.02
USP40-210ENST00000454354 SMCO3A2RU48 225 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 A8MTW9 85 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 SCGB1D2O95969 90 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 MBPP02686 304 aaPredicted RBP8.69□□□□□ -1.02
USP40-210ENST00000454354 METTL15P1P0C7V9 234 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 ORM2P19652 201 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 TCTAP57738 103 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 DEFB1P60022 68 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 LGALS9CQ6DKI2 356 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 ZNF709Q8N972 641 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 LINC00052Q96N35 136 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 NEU1Q99519 415 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 SLC25A22Q9H936 323 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 NPVFQ9HCQ7 196 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 BATF3Q9NR55 127 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 NUDT15Q9NV35 164 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 DNAH10Q8IVF4 4471 aa8.69□□□□□ -1.02
USP40-210ENST00000454354 A0A0J9YX75 114 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 C7orf66A4D0T2 115 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 ZNF705FA8MVS1 300 aaPredicted RBP8.68□□□□□ -1.02
USP40-210ENST00000454354 IL5P05113 134 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 LINC00869P0C866 280 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 ZNF705DP0CH99 300 aaPredicted RBP8.68□□□□□ -1.02
USP40-210ENST00000454354 ZNF705BP0CI00 300 aaPredicted RBP8.68□□□□□ -1.02
USP40-210ENST00000454354 RRAS2P62070 204 aaPredicted RBP8.68□□□□□ -1.02
USP40-210ENST00000454354 OR10P1Q8NGE3 313 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 ZNF431Q8TF32 576 aaPredicted RBP8.68□□□□□ -1.02
USP40-210ENST00000454354 C2CD4CQ8TF44 421 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 C16orf92Q96LL3 132 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 C20orf173Q96LM9 149 aa8.68□□□□□ -1.02
USP40-210ENST00000454354 SHANK2-AS3Q9BTD1 123 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms