RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 MED13Q9UHV7 2174 aa6.94□□□□□ -1.3
SCN9A-203ENST00000409672 IGHV4-4A0A075B6R2 117 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 RNF166Q96A37 237 aaPredicted RBP6.93□□□□□ -1.3
SCN9A-203ENST00000409672 IGHV1-3A0A0C4DH29 117 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 M0R2P5 195 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 FNDC1Q4ZHG4 1894 aaPredicted RBP6.93□□□□□ -1.3
SCN9A-203ENST00000409672 RAG2P55895 527 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 SRSF1Q07955 248 aaKnown RBP eCLIP6.93□□□□□ -1.3
SCN9A-203ENST00000409672 NKAPP1Q8N9T2 125 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 ESM1Q9NQ30 184 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 COL4A1P02462 1669 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 TMEM178BH3BS89 294 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 SPXQ9BT56 116 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 TPTE2P1Q5T6R2 138 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 PEF1Q9UBV8 284 aaKnown RBP6.93□□□□□ -1.3
SCN9A-203ENST00000409672 UQCR10Q9UDW1 63 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 SMKR1H3BMG3 65 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 FSTP19883 344 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 UBE2BP63146 152 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 UPK2O00526 184 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 PSG8Q9UQ74 426 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 NRXN2Q9P2S2 1712 aa6.93□□□□□ -1.3
SCN9A-203ENST00000409672 IGKV2D-24A0A075B6R9 120 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 C5orf30Q96GV9 206 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 MT-ND6P03923 174 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 GAGE6Q13070 117 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 C1QTNF5Q9BXJ0 243 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 CYSLTR1Q9Y271 337 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 C2orf68Q2NKX9 166 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 C14orf178Q8N769 122 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-203ENST00000409672 IGHMP01871 453 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 MSMBP08118 114 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 CIARTQ8N365 385 aaPredicted RBP6.92□□□□□ -1.3
SCN9A-203ENST00000409672 ITGB1BP1O14713 200 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 NXPH4O95158 308 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 TCF15Q12870 199 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 OTORQ9NRC9 128 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 PIN1P1O15428 100 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 PET117Q6UWS5 81 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 RPRMLQ8N4K4 120 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 IGKV1D-13A0A0B4J2D9 117 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 IGHV1-8P0DP01 117 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 IGKV1-13P0DP09 117 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 VWCEQ96DN2 955 aa6.92□□□□□ -1.3
SCN9A-203ENST00000409672 TRBV5-5A0A0J9YX44 114 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-203ENST00000409672 DEFB136Q30KP8 78 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 SLC50A1Q9BRV3 221 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 OVOL3O00110 214 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 IL36BQ9NZH7 164 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 SHANK1Q9Y566 2161 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 A0A087WV48 116 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 E7EQL1 145 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 LCN12Q6JVE5 192 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A1Q86YD7 464 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 LYZL4Q96KX0 146 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 LRRC37AA6NMS7 1700 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A26D6RGX4 464 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 ESDP10768 282 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 MST1P26927 711 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 LBHQ53QV2 105 aaPredicted RBP6.91□□□□□ -1.3
SCN9A-203ENST00000409672 NAA38Q9BRA0 125 aaKnown RBP6.91□□□□□ -1.3
SCN9A-203ENST00000409672 A8MXK9 166 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 PSG1P11464 419 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 CA7P43166 264 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 H2BFSP57053 126 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 PQLC2LA1A4F0 135 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 C15orf61A6NNL5 157 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 Q5BKY6 102 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 ZNF497Q6ZNH5 498 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 ORAOV1Q8WV07 137 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 RCC1LQ96I51 464 aaKnown RBP6.91□□□□□ -1.3
SCN9A-203ENST00000409672 TIMM17AQ99595 171 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 PRCDQ00LT1 54 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 NABP1Q96AH0 204 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 WBP1Q96G27 269 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 ZSWIM8A7E2V4 1837 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 AZU1P20160 251 aa6.91□□□□□ -1.3
SCN9A-203ENST00000409672 RPL18AQ02543 176 aaKnown RBP6.91□□□□□ -1.3
SCN9A-203ENST00000409672 ADMP35318 185 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 Q6ZQT7 251 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 ZNF562Q6V9R5 426 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 SLC25A38Q96DW6 304 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 CSTL1Q9H114 145 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 TRAV3A0A0B4J244 114 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A10PA6NDY2 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A18PA6NE21 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A16PA6NEW6 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A20PA6NIJ5 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A8PA6NJQ4 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A7PA6NKC0 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A22PA8MWA6 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A12PA8MX19 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A5PA8MXJ8 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A23PA8MXZ1 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 LINC01619G3V211 115 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 GREM1O60565 184 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A15PP0C7V4 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A13PP0C7W8 464 aa6.9□□□□□ -1.3
SCN9A-203ENST00000409672 FAM90A14PP0C7W9 464 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms