RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.79□□□□□ -0.52
TRAF1-201ENST00000373887 FAM166AQ6J272 317 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 HIST1H2BHQ93079 126 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 HIST1H2BNQ99877 126 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 HIST1H2BMQ99879 126 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 OSTCQ9NRP0 149 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 hDV102S1A0JD36 115 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 GNB1LQ9BYB4 327 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 EXOC3-AS1Q8N2X6 119 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 PLSCR4Q9NRQ2 329 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 EP300Q09472 2414 aaPredicted RBP11.79□□□□□ -0.52
TRAF1-201ENST00000373887 WFDC1Q9HC57 220 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 RNF223E7ERA6 249 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 SUMO4Q6EEV6 95 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 BCL6BQ8N143 479 aaPredicted RBP11.79□□□□□ -0.52
TRAF1-201ENST00000373887 SLC25A28Q96A46 364 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 RNF126Q9BV68 326 aa11.79□□□□□ -0.52
TRAF1-201ENST00000373887 MLNRO43193 412 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 ESDP10768 282 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 SPATA31B1PQ5VZV4 182 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 NDPQ00604 133 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 A0A087X0K7 114 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 TSKUQ8WUA8 353 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 TRBV6-7A0A0A0MS04 114 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 PPBPP02775 128 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 ANAPC10Q9UM13 185 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 RALGAPA1Q6GYQ0 2036 aa11.78□□□□□ -0.52
TRAF1-201ENST00000373887 WNT2P09544 360 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 TEX43Q6ZNM6 134 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 GTSF1LQ9H1H1 148 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 F2Z2F3 143 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 OVOL1O14753 267 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 YPEL1O60688 119 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 YPEL2Q96QA6 119 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 NEUROG3Q9Y4Z2 214 aa11.77□□□□□ -0.52
TRAF1-201ENST00000373887 FAM90A1Q86YD7 464 aa11.77□□□□□ -0.53
TRAF1-201ENST00000373887 MDS2Q8NDY4 140 aa11.77□□□□□ -0.53
TRAF1-201ENST00000373887 IGLV3-32A0A0A0MS00 114 aa11.77□□□□□ -0.53
TRAF1-201ENST00000373887 PMS2P5A8MQ11 134 aa11.77□□□□□ -0.53
TRAF1-201ENST00000373887 GUSBP1Q15486 140 aa11.77□□□□□ -0.53
TRAF1-201ENST00000373887 ACTL10Q5JWF8 245 aa11.77□□□□□ -0.53
TRAF1-201ENST00000373887 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.77□□□□□ -0.53
TRAF1-201ENST00000373887 ZNF497Q6ZNH5 498 aa11.77□□□□□ -0.53
TRAF1-201ENST00000373887 COL8A2P25067 703 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 SEC11AP67812 179 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 RPRMLQ8N4K4 120 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 MRAPQ8TCY5 172 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 IGKV1-9A0A0C4DH69 117 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 C6orf226Q5I0X4 101 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 IGFL4Q6B9Z1 124 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 TEX38Q6PEX7 206 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 C1orf159Q96HA4 380 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 UBE2E2Q96LR5 201 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 RTTNQ86VV8 2226 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 LYZL1Q6UWQ5 148 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 BMPERQ8N8U9 685 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 TRAV13-1A0A0B4J241 112 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 CLPSP04118 112 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 TMEM200BQ69YZ2 307 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 C17orf82Q86X59 251 aaPredicted RBP11.76□□□□□ -0.53
TRAF1-201ENST00000373887 HIST1H2BLQ99880 126 aa11.76□□□□□ -0.53
TRAF1-201ENST00000373887 K7ENP7 123 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 IL18BPO95998 194 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 RASL10AQ92737 203 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 TICRRQ7Z2Z1 1910 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 TRAV41A0A0B4J266 112 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 CXCL1P09341 107 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 ERCC8Q13216 396 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 C10orf55Q5SWW7 151 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 BPESC1Q9GZL8 116 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 H3BUX3 64 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 LILRA1O75019 489 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 GGTLC1Q9BX51 225 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 IGHV2-26A0A0B4J1V2 119 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 LEPROTO15243 131 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 LYPD3O95274 346 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 PRCDQ00LT1 54 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 PRSS33Q8NF86 280 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 MCRIP2Q9BUT9 160 aaKnown RBP11.75□□□□□ -0.53
TRAF1-201ENST00000373887 ARHGEF17Q96PE2 2063 aaPredicted RBP11.75□□□□□ -0.53
TRAF1-201ENST00000373887 DSCR9P59020 149 aa11.75□□□□□ -0.53
TRAF1-201ENST00000373887 MGAMO43451 1857 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 ZNF329Q86UD4 541 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 TPTE2P1Q5T6R2 138 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 Q8TAT8 98 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 MGST2Q99735 147 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 FAM90A2PQ658T7 463 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 GVINP1Q7Z2Y8 2422 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 HEATR5BQ9P2D3 2071 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 SRRM4A7MD48 611 aaKnown RBP11.74□□□□□ -0.53
TRAF1-201ENST00000373887 FCN3O75636 299 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 ZNF114Q8NC26 417 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 PLEKHB2Q96CS7 222 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 FNDC1Q4ZHG4 1894 aaPredicted RBP11.74□□□□□ -0.53
TRAF1-201ENST00000373887 SMKR1H3BMG3 65 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 C15orf32Q32M92 178 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 C20orf204Q6ZNR8 217 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 NR2C2APQ86WQ0 139 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 CSTL1Q9H114 145 aa11.74□□□□□ -0.53
TRAF1-201ENST00000373887 RPL36AP83881 106 aaKnown RBP11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms