RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GP9P14770 177 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 PPIFP30405 207 aaKnown RBP10.72□□□□□ -0.69
PTPRF-202ENST00000372405 SMUG1Q53HV7 270 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 ZNF343Q6P1L6 599 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 Q6YL49 198 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 TXN2Q99757 166 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 FOXC2Q99958 501 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 ACANP16112 2415 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 SONP18583 2426 aaKnown RBP10.72□□□□□ -0.69
PTPRF-202ENST00000372405 TRBV20OR9-2A0A075B6H5 130 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 OR2C1O95371 312 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 C11orf52Q96A22 123 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 NAT8Q9UHE5 227 aa10.72□□□□□ -0.69
PTPRF-202ENST00000372405 A0A1W2PRE2 83 aa10.71□□□□□ -0.69
PTPRF-202ENST00000372405 TSPAN4O14817 238 aa10.71□□□□□ -0.69
PTPRF-202ENST00000372405 GPR183P32249 361 aa10.71□□□□□ -0.69
PTPRF-202ENST00000372405 KRTAP1-1Q07627 177 aa10.71□□□□□ -0.69
PTPRF-202ENST00000372405 TMEM241Q24JQ0 296 aa10.71□□□□□ -0.69
PTPRF-202ENST00000372405 PRDM13Q9H4Q3 707 aa10.71□□□□□ -0.69
PTPRF-202ENST00000372405 H3BRN7 92 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 CLEC3BP05452 202 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 RPL23P62829 140 aaKnown RBP10.7□□□□□ -0.7
PTPRF-202ENST00000372405 PNRC1Q12796 327 aaPredicted RBP10.7□□□□□ -0.7
PTPRF-202ENST00000372405 TMEM95Q3KNT9 176 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 IL17RELQ6ZVW7 336 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 OR5R1Q8NH85 324 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 ISOC2Q96AB3 205 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 SHANK2-AS3Q9BTD1 123 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 SMCO4Q9NRQ5 59 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 SUMO1P63165 101 aaKnown RBP10.7□□□□□ -0.7
PTPRF-202ENST00000372405 CFHR3Q02985 330 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 STXBP6Q8NFX7 210 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 Q8WTZ3 238 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 ELOVL1Q9BW60 279 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 VPREB3Q9UKI3 123 aa10.7□□□□□ -0.7
PTPRF-202ENST00000372405 IGHV3-35A0A0C4DH35 117 aa10.69□□□□□ -0.7
PTPRF-202ENST00000372405 PGPEP1LA6NFU8 196 aa10.69□□□□□ -0.7
PTPRF-202ENST00000372405 AP4M1O00189 453 aa10.69□□□□□ -0.7
PTPRF-202ENST00000372405 CRYBB3P26998 211 aa10.69□□□□□ -0.7
PTPRF-202ENST00000372405 MYCNOSP40205 109 aa10.69□□□□□ -0.7
PTPRF-202ENST00000372405 ZNF600Q6ZNG1 722 aa10.69□□□□□ -0.7
PTPRF-202ENST00000372405 A0A087WWC5 75 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 COLCA2A8K830 154 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 H3BTX0 84 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 HOXA3O43365 443 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-202ENST00000372405 BRI3O95415 125 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 TRGV3P03979 118 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ATF4P18848 351 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ADIRFQ15847 76 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 CLEC19AQ6UXS0 136 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 BLNKQ8WV28 456 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 EEF1AKMT3Q96AZ1 226 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 KLK15Q9H2R5 256 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 TMEM14CQ9P0S9 112 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 MYO9AB2RTY4 2548 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 IGHV3OR16-8A0A075B7F1 116 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 TRBV7-1A0A0A6YYK4 115 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 FAM223BA6NKX1 122 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 B4DEV8 164 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 IGLV1-40P01703 118 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 NBEAP1P0C6P0 100 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ATP5G2Q06055 141 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 LINC01551Q86U37 167 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ZNF329Q86UD4 541 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 FAM223AQ8IWN6 122 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 C2CD4CQ8TF44 421 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 YPEL4Q96NS1 127 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 TUBA4BQ9H853 241 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ZFAND3Q9H8U3 227 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 AURKAIP1Q9NWT8 199 aaPredicted RBP10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ZNF586Q9NXT0 402 aa10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ANK3Q12955 4377 aaKnown RBP10.68□□□□□ -0.7
PTPRF-202ENST00000372405 ZNF98A6NK75 572 aa10.67□□□□□ -0.7
PTPRF-202ENST00000372405 MRPS12O15235 138 aaKnown RBP10.67□□□□□ -0.7
PTPRF-202ENST00000372405 RPL35P42766 123 aaKnown RBP10.67□□□□□ -0.7
PTPRF-202ENST00000372405 RANP62826 216 aaKnown RBP10.67□□□□□ -0.7
PTPRF-202ENST00000372405 RNF212Q495C1 297 aa10.67□□□□□ -0.7
PTPRF-202ENST00000372405 LCNL1Q6ZST4 164 aa10.67□□□□□ -0.7
PTPRF-202ENST00000372405 ZNF580Q9UK33 172 aa10.67□□□□□ -0.7
PTPRF-202ENST00000372405 H3BUA1 57 aa10.66□□□□□ -0.7
PTPRF-202ENST00000372405 TGOLN2O43493 480 aa10.66□□□□□ -0.7
PTPRF-202ENST00000372405 TPPP2P59282 170 aa10.66□□□□□ -0.7
PTPRF-202ENST00000372405 TOMM20LQ6UXN7 152 aa10.66□□□□□ -0.7
PTPRF-202ENST00000372405 CUBNO60494 3623 aa10.66□□□□□ -0.7
PTPRF-202ENST00000372405 PPP5D1E7EU14 171 aa10.66□□□□□ -0.7
PTPRF-202ENST00000372405 IGLC2P0DOY2 106 aa10.66□□□□□ -0.7
PTPRF-202ENST00000372405 SCGB2A1O75556 95 aa10.65□□□□□ -0.7
PTPRF-202ENST00000372405 TRBV12-3P01733 135 aa10.65□□□□□ -0.7
PTPRF-202ENST00000372405 C10orf99Q6UWK7 81 aa10.65□□□□□ -0.7
PTPRF-202ENST00000372405 SIGLECL1Q8N7X8 197 aa10.65□□□□□ -0.7
PTPRF-202ENST00000372405 C15orf54Q8N8G6 183 aa10.65□□□□□ -0.7
PTPRF-202ENST00000372405 LINC00479Q96M42 142 aa10.65□□□□□ -0.7
PTPRF-202ENST00000372405 C17orf77Q96MU5 243 aa10.65□□□□□ -0.7
PTPRF-202ENST00000372405 GAR1Q9NY12 217 aaKnown RBP10.65□□□□□ -0.7
PTPRF-202ENST00000372405 CLPSL1A2RUU4 121 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 HIST1H1EP10412 219 aaKnown RBP10.65□□□□□ -0.71
PTPRF-202ENST00000372405 PF4V1P10720 104 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 BPIFA4PQ86YQ2 179 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 FAM24BQ8N5W8 94 aa10.65□□□□□ -0.71
PTPRF-202ENST00000372405 OCC1Q8TAD7 63 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms