RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 FAM90A16PA6NEW6 464 aa5.96□□□□□ -1.46
VPS13A-202ENST00000357409 FAM90A8PA6NJQ4 464 aa5.96□□□□□ -1.46
VPS13A-202ENST00000357409 SLURP1P55000 103 aa5.96□□□□□ -1.46
VPS13A-202ENST00000357409 MARF1Q9Y4F3 1742 aaKnown RBP5.95□□□□□ -1.46
VPS13A-202ENST00000357409 LOC102723996A0A087X1L8 192 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 TMEM213A2RRL7 107 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 CLPSL1A2RUU4 121 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 H3BRM9 83 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 ERVH48-1M5A8F1 160 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 OVOL1O14753 267 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 SRP19P09132 144 aaKnown RBP5.95□□□□□ -1.46
VPS13A-202ENST00000357409 NOP10Q9NPE3 64 aaKnown RBP5.95□□□□□ -1.46
VPS13A-202ENST00000357409 MCM3APO60318 1980 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 TOMM40O96008 361 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 TMEM126AQ9H061 195 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 DOCK1Q14185 1865 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 GGACTQ9BVM4 153 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 CEACAM8P31997 349 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-202ENST00000357409 RAB9AP51151 201 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 SRSF1Q07955 248 aaKnown RBP eCLIP5.95□□□□□ -1.46
VPS13A-202ENST00000357409 ZNF524Q96C55 264 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 A0A087X0K7 114 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 BCL6BQ8N143 479 aaPredicted RBP5.95□□□□□ -1.46
VPS13A-202ENST00000357409 H0YIZ8 118 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 IGHV4-38-2P0DP08 117 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 MST1LQ2TV78 715 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 ALS2Q96Q42 1657 aa5.95□□□□□ -1.46
VPS13A-202ENST00000357409 BLCAPP62952 87 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 TRBV6-7A0A0A0MS04 114 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 H3BMM0 161 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 NPBQ8NG41 125 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 UBE2WQ96B02 151 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 LAMA4Q16363 1823 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 IGLV3-21P80748 117 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-202ENST00000357409 FMC1Q96HJ9 113 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 REG4Q9BYZ8 158 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 NHSQ6T4R5 1651 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 ZNF98A6NK75 572 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 LINC01619G3V211 115 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 TM2D1Q9BX74 207 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 ADAMTSL3P82987 1691 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 DTX2Q86UW9 622 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 TMEM158Q8WZ71 300 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 NEUROG3Q9Y4Z2 214 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 IGLL5B9A064 214 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 GNRH2O43555 120 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 C5orf38Q86SI9 138 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 OTORQ9NRC9 128 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 KNL1Q8NG31 2342 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 SNRNP200O75643 2136 aaKnown RBP5.94□□□□□ -1.46
VPS13A-202ENST00000357409 PLA2G5P39877 138 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 UBE2BP63146 152 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 CYYR1Q96J86 154 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 MGST2Q99735 147 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 SPCS1Q9Y6A9 102 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 SCN7AQ01118 1682 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 POLR2AP24928 1970 aaKnown RBP5.94□□□□□ -1.46
VPS13A-202ENST00000357409 Q6ZS92 163 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 STPG4Q8N801 248 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 FAM110AQ9BQ89 295 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 ABCA3Q99758 1704 aa5.94□□□□□ -1.46
VPS13A-202ENST00000357409 IGKCP01834 107 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 PRIMA1Q86XR5 153 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 A0A1B0GUS0 222 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 DOCK2Q92608 1830 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 RNF222A6NCQ9 220 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 XCL1P47992 114 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 C18orf12Q96KH6 178 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 GFI1Q99684 422 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 DICER1Q9UPY3 1922 aaKnown RBP5.93□□□□□ -1.46
VPS13A-202ENST00000357409 TINCRA0A1B0GVN0 87 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 GAGE2EQ4V326 116 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 GAGE2DQ9UEU5 116 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 CACNA1CQ13936 2221 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 H0YJW9 148 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 TREML4Q6UXN2 200 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 IGLV2-18A0A075B6J9 118 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 ZNF883P0CG24 379 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 WIPF2Q8TF74 440 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-202ENST00000357409 STAG3L2P0CL84 134 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 RPL18AQ02543 176 aaKnown RBP5.93□□□□□ -1.46
VPS13A-202ENST00000357409 GGTLC1Q9BX51 225 aa5.93□□□□□ -1.46
VPS13A-202ENST00000357409 ASXL3Q9C0F0 2248 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 CXCL1P09341 107 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 PRSS57Q6UWY2 283 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 SRSF8Q9BRL6 282 aaKnown RBP5.92□□□□□ -1.46
VPS13A-202ENST00000357409 M0R2P5 195 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 TMEM256Q8N2U0 113 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 PIFOQ8TCI5 191 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 IZUMO1RA6ND01 250 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 PAX1P15863 534 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 MRPS16Q9Y3D3 137 aaKnown RBP5.92□□□□□ -1.46
VPS13A-202ENST00000357409 C5orf64Q2M2E5 130 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 Q6ZRM9 215 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 UQCR10Q9UDW1 63 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 PRCDQ00LT1 54 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 PMVKQ15126 192 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 ABCA7Q8IZY2 2146 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 NRN1Q9NPD7 142 aa5.92□□□□□ -1.46
VPS13A-202ENST00000357409 NPDC1Q9NQX5 325 aaPredicted RBP5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms