RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ERCC8Q13216 396 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 LYZL1Q6UWQ5 148 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 LINC00114Q6XXX2 140 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 TNFRSF14Q92956 283 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 VSIRQ9H7M9 311 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 IGKV1D-43A0A0B4J1Z2 117 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 NEGR1Q7Z3B1 354 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 A0A087WX48 190 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 SOCS3O14543 225 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 WNK2Q9Y3S1 2297 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 IGKV2-40A0A087WW87 121 aaPredicted RBP11.49□□□□□ -0.57
CSPG4-201ENST00000308508 IGKV2D-40P01614 121 aaPredicted RBP11.49□□□□□ -0.57
CSPG4-201ENST00000308508 DOCK8Q8NF50 2099 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 C17orf100A8MU93 164 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 ANAPC10Q9UM13 185 aa11.49□□□□□ -0.57
CSPG4-201ENST00000308508 A8MWP6 167 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 F8W1H4 67 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 SUMO4Q6EEV6 95 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 SELENOKQ9Y6D0 94 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 ZNF876PQ49A33 203 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 ZNF625Q96I27 306 aaPredicted RBP11.48□□□□□ -0.57
CSPG4-201ENST00000308508 XIRP1Q702N8 1843 aaKnown RBP11.48□□□□□ -0.57
CSPG4-201ENST00000308508 PMS2P5A8MQ11 134 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 FAM201AQ5SY85 155 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 SAP25Q8TEE9 199 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 PRR19A6NJB7 356 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 RPL36AP83881 106 aaKnown RBP11.48□□□□□ -0.57
CSPG4-201ENST00000308508 RPL36ALQ969Q0 106 aaKnown RBP11.48□□□□□ -0.57
CSPG4-201ENST00000308508 RCHY1Q96PM5 261 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 ZNF415Q09FC8 603 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 RSPO4Q2I0M5 234 aaPredicted RBP11.48□□□□□ -0.57
CSPG4-201ENST00000308508 LINC01560Q8TB33 94 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 TMEM158Q8WZ71 300 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 SCRT1Q9BWW7 348 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 REG4Q9BYZ8 158 aa11.48□□□□□ -0.57
CSPG4-201ENST00000308508 CMC4P56277 68 aaPredicted RBP11.47□□□□□ -0.57
CSPG4-201ENST00000308508 C6orf226Q5I0X4 101 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 MRPS18CQ9Y3D5 142 aaKnown RBP11.47□□□□□ -0.57
CSPG4-201ENST00000308508 LSM4Q9Y4Z0 139 aaKnown RBP11.47□□□□□ -0.57
CSPG4-201ENST00000308508 SHANK3Q9BYB0 1731 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 PPDPFLQ8WWR9 84 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 TRGV9Q99603 122 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 C7orf69Q9H7B7 122 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 EXOC3-AS1Q8N2X6 119 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 CSTL1Q9H114 145 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 ZC2HC1BQ5TFG8 222 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 GLI3P10071 1580 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 CSRP3P50461 194 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 ZNF138P52744 262 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 MBNL3Q9NUK0 354 aaKnown RBP11.47□□□□□ -0.57
CSPG4-201ENST00000308508 THADAQ6YHU6 1953 aa11.47□□□□□ -0.57
CSPG4-201ENST00000308508 CD33P20138 364 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 WBP1Q96G27 269 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 PRSS22Q9GZN4 317 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 A0A1W2PRX2 142 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 TCRAP04437 139 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 RFPL3SP0C7P2 107 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 GFRA4Q9GZZ7 299 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 TAF1LQ8IZX4 1826 aa11.46□□□□□ -0.57
CSPG4-201ENST00000308508 LTBP4Q8N2S1 1624 aa11.46□□□□□ -0.58
CSPG4-201ENST00000308508 IGHV1-2P23083 117 aa11.46□□□□□ -0.58
CSPG4-201ENST00000308508 ATP6V0BQ99437 205 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 SH2D1AO60880 128 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 CYTL1Q9NRR1 136 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 C9orf118A6NHY6 69 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 CCL3L1P16619 93 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 PRIMA1Q86XR5 153 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 LYPD1Q8N2G4 141 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 LINC00477Q96M19 166 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 UBL5Q9BZL1 73 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 J3QRE1 110 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 ZNF474Q6S9Z5 364 aaPredicted RBP11.45□□□□□ -0.58
CSPG4-201ENST00000308508 CTSBP07858 339 aa11.45□□□□□ -0.58
CSPG4-201ENST00000308508 UTF1Q5T230 341 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 LY6G5BQ8NDX9 201 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 COL18A1P39060 1754 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 NHSL1Q5SYE7 1610 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 A0A0A6YYD4 124 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 FAM231BA6NCW3 169 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 CELA3BP08861 270 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 C20orf144Q9BQM9 153 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 FAM27E3Q08E93 113 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 PPP1R32Q7Z5V6 425 aa11.44□□□□□ -0.58
CSPG4-201ENST00000308508 FDCSPQ8NFU4 85 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 FXYD7P58549 80 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 TMEM258P61165 79 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 RPP25LQ8N5L8 163 aaKnown RBP11.43□□□□□ -0.58
CSPG4-201ENST00000308508 COL24A1Q17RW2 1714 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 SPTBN2O15020 2390 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 LYZL4Q96KX0 146 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 SRRM4A7MD48 611 aaKnown RBP11.43□□□□□ -0.58
CSPG4-201ENST00000308508 SPSB3Q6PJ21 355 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 SNHG12Q9BXW3 62 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 IGKV1-9A0A0C4DH69 117 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 NABP1Q96AH0 204 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 SIGLEC12Q96PQ1 595 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 TRIOBPQ9H2D6 2365 aa11.43□□□□□ -0.58
CSPG4-201ENST00000308508 IGHV3-73A0A0B4J1V6 119 aa11.42□□□□□ -0.58
CSPG4-201ENST00000308508 RPL15P61313 204 aaKnown RBP11.42□□□□□ -0.58
CSPG4-201ENST00000308508 Q0VG73 95 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms