RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 OR2T10Q8NGZ9 312 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 LINC00052Q96N35 136 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 DRC3Q9H069 523 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 UTP11Q9Y3A2 253 aaKnown RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 CHCHD2Q9Y6H1 151 aaPredicted RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 HRNRQ86YZ3 2850 aaPredicted RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 KDM6AO15550 1401 aaPredicted RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 TNS3Q68CZ2 1445 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 CHD8Q9HCK8 2581 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 NBEAL2Q6ZNJ1 2754 aa-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 ASCC3Q8N3C0 2202 aaKnown RBP-0.23□□□□□ -2.45
SCN1A-208ENST00000625916 A0A0A6YYH2 397 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 A6NJ64 397 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 OR2J2O76002 312 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 CRYZL1O95825 349 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 PSME3P61289 254 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 QRFPP83859 136 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 TSNQ15631 228 aaKnown RBP-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 OR8D4Q8NGM9 314 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 OR2T35Q8NGX2 323 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 SLC35B4Q969S0 331 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 TP53RKQ96S44 253 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 GPER1Q99527 375 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 HIST1H2BLQ99880 126 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 BCL2L10Q9HD36 194 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 CREBBPQ92793 2442 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 PHRF1Q9P1Y6 1649 aaKnown RBP-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 SBF1O95248 1867 aa-0.24□□□□□ -2.45
SCN1A-208ENST00000625916 VWFP04275 2813 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 A0A087X0T9 212 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 TRBV30A0A0K0K1B3 111 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 C5orf67F2Z3F1 127 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 F8W1H4 67 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 H3BRM9 83 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 PIRO00625 290 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 GADD45GO95257 159 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 ISG15P05161 165 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 CD2P06729 351 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 CD79AP11912 226 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 RPL5P46777 297 aaKnown RBP-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 RHOBP62745 196 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 CD200R1LQ6Q8B3 271 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 TEN1Q86WV5 123 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 KRT222Q8N1A0 295 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 GDPD1Q8N9F7 314 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 OR52E6Q96RD3 313 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 TMEM138Q9NPI0 162 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 UBAP1Q9NZ09 502 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 USE1Q9NZ43 259 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 CYSLTR1Q9Y271 337 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 NUP155O75694 1391 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 PTPRZ1P23471 2315 aaPredicted RBP-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 TEP1Q99973 2627 aaKnown RBP-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 COL12A1Q99715 3063 aa-0.25□□□□□ -2.45
SCN1A-208ENST00000625916 KIAA1549Q9HCM3 1950 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 ECM29Q5VYK3 1845 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 MED1Q15648 1581 aaPredicted RBP-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 LRP1Q07954 4544 aaKnown RBP-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 C9orf84Q5VXU9 1444 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 C1orf196B1AJZ1 125 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 DCTN3O75935 186 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 DEXIO95424 95 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 TNNC2P02585 160 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 SMIM10L2AP0DMW4 78 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 SMIM10L2BP0DMW5 78 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 HIST1H1TP22492 207 aaPredicted RBP-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 CASP1P29466 404 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 DEFA1P59665 94 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 RPS20P60866 119 aaKnown RBP-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 SPCS3P61009 180 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 SPATA45Q537H7 98 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 FAM151BQ6UXP7 276 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 SLC30A7Q8NEW0 376 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 OR52L1Q8NGH7 329 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 ATP6V1G3Q96LB4 118 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 C20orf27Q9GZN8 174 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 CCDC90BQ9GZT6 254 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 WFDC10AQ9H1F0 79 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 IDI2-AS1Q9NZ38 188 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 PKIGQ9Y2B9 76 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 SRRM2Q9UQ35 2752 aaKnown RBP-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 IGSF10Q6WRI0 2623 aa-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 RIF1Q5UIP0 2472 aaKnown RBP-0.26□□□□□ -2.45
SCN1A-208ENST00000625916 IGF2RP11717 2491 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 CECR2Q9BXF3 1484 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 MUC4Q99102 2169 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 RBP1P09455 135 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 MAGEA2P43356 314 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 NKX2-5P52952 324 aaPredicted RBP-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 DYNLT1P63172 113 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 KRTAP20-2Q3LI61 65 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 C4orf22Q6V702 233 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 ZNF833PQ6ZTB9 187 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 ZNF431Q8TF32 576 aaPredicted RBP-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 CANT1Q8WVQ1 401 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 SLAMF6Q96DU3 332 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 ZC2HC1AQ96GY0 325 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 PPP1R2P1Q96PQ5 205 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 LYSMD1Q96S90 227 aa-0.27□□□□□ -2.45
SCN1A-208ENST00000625916 PCTPQ9UKL6 214 aa-0.27□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms