RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MPZP25189 248 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 H2BFSP57053 126 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 TEX43Q6ZNM6 134 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 FAM110DQ8TAY7 271 aaPredicted RBP16.78■□□□□ 0.28
UPF1-207ENST00000599848 MPTX1A8MV57 137 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 C1QTNF9P0C862 333 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 SPATA31B1PQ5VZV4 182 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 ZNF474Q6S9Z5 364 aaPredicted RBP16.78■□□□□ 0.28
UPF1-207ENST00000599848 TMEM158Q8WZ71 300 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 TMEM238C9JI98 176 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 SLAQ13239 276 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 TOMM40O96008 361 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 SIGLEC9Q9Y336 463 aa16.78■□□□□ 0.28
UPF1-207ENST00000599848 OTX1P32242 354 aaPredicted RBP16.77■□□□□ 0.28
UPF1-207ENST00000599848 MST1LQ2TV78 715 aa16.77■□□□□ 0.28
UPF1-207ENST00000599848 ZNF876PQ49A33 203 aa16.77■□□□□ 0.28
UPF1-207ENST00000599848 CHTOPQ9Y3Y2 248 aaKnown RBP16.77■□□□□ 0.28
UPF1-207ENST00000599848 IGHV2-70DA0A0C4DH43 119 aa16.77■□□□□ 0.28
UPF1-207ENST00000599848 COL8A2P25067 703 aa16.77■□□□□ 0.28
UPF1-207ENST00000599848 C6orf226Q5I0X4 101 aa16.77■□□□□ 0.28
UPF1-207ENST00000599848 SLC25A39Q9BZJ4 359 aaPredicted RBP16.77■□□□□ 0.28
UPF1-207ENST00000599848 NDUFA3O95167 84 aa16.77■□□□□ 0.27
UPF1-207ENST00000599848 ATP5G3P48201 142 aa16.77■□□□□ 0.27
UPF1-207ENST00000599848 EFNB3Q15768 340 aa16.77■□□□□ 0.27
UPF1-207ENST00000599848 PLA2G2CQ5R387 149 aa16.77■□□□□ 0.27
UPF1-207ENST00000599848 A0A087WWC5 75 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 TEX48A0A1B0GUV7 120 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 PAX2Q02962 417 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 PUSL1Q8N0Z8 303 aaKnown RBP16.76■□□□□ 0.27
UPF1-207ENST00000599848 NDUFB8O95169 186 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 IGKV1D-13A0A0B4J2D9 117 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 IGKV1-13P0DP09 117 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 NCOR1P1Q9H4R4 102 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 ABCA7Q8IZY2 2146 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 IGKV3D-20A0A0C4DH25 116 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 ID3Q02535 119 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 MS4A6AQ9H2W1 248 aa16.76■□□□□ 0.27
UPF1-207ENST00000599848 ELANEP08246 267 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 Q8TCH9 128 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 REG4Q9BYZ8 158 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 IGKV1-9A0A0C4DH69 117 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 GATA4P43694 442 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 PRB3Q04118 309 aaPredicted RBP16.75■□□□□ 0.27
UPF1-207ENST00000599848 ZNF562Q6V9R5 426 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 KIF13BQ9NQT8 1826 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 ZNF98A6NK75 572 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 PRDM13Q9H4Q3 707 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 FCN3O75636 299 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 CD177Q8N6Q3 437 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 SPOCK3Q9BQ16 436 aa16.75■□□□□ 0.27
UPF1-207ENST00000599848 KLF2Q9Y5W3 355 aaPredicted RBP16.75■□□□□ 0.27
UPF1-207ENST00000599848 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.74■□□□□ 0.27
UPF1-207ENST00000599848 SYNJ2BPP57105 145 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 TSKUQ8WUA8 353 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 F5H768 121 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 COQ2Q96H96 371 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 FNDC10F2Z333 226 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 GNG5P63218 68 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 EDA2RQ9HAV5 297 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 MUC21A0A0G2JKD1 596 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 MUC21A0A140T8X8 626 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 WISP1O95388 367 aa16.74■□□□□ 0.27
UPF1-207ENST00000599848 BRCA1P38398 1863 aaKnown RBP16.74■□□□□ 0.27
UPF1-207ENST00000599848 ZNF561-AS1K7EIQ3 104 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 SRP19P09132 144 aaKnown RBP16.73■□□□□ 0.27
UPF1-207ENST00000599848 EFNB1P98172 346 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 IFITM2Q01629 132 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 LAGE3Q14657 143 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 ZNF329Q86UD4 541 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 DLX4Q92988 240 aaPredicted RBP16.73■□□□□ 0.27
UPF1-207ENST00000599848 PDE6HQ13956 83 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 CHCHD1Q96BP2 118 aaKnown RBP16.73■□□□□ 0.27
UPF1-207ENST00000599848 SLC17A3O00476 420 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 FOXL1Q12952 345 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 DMRTA1Q5VZB9 504 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 FGFBP3Q8TAT2 258 aa16.73■□□□□ 0.27
UPF1-207ENST00000599848 MTCL1Q9Y4B5 1905 aaKnown RBP16.72■□□□□ 0.27
UPF1-207ENST00000599848 RAMP3O60896 148 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 DEFB130BP0DP73 79 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 DEFB130AP0DP74 79 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 DEFB131AP59861 70 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 IL17RELQ6ZVW7 336 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 GVINP1Q7Z2Y8 2422 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 CACNA1EQ15878 2313 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 TRAV12-3A0A0B4J271 114 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 PYYP10082 97 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 UBE2E2Q96LR5 201 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 OVOL3O00110 214 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 PAX4O43316 350 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 PSG3Q16557 428 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 CACNA1BQ00975 2339 aa16.72■□□□□ 0.27
UPF1-207ENST00000599848 ZNF646O15015 1829 aaPredicted RBP16.71■□□□□ 0.27
UPF1-207ENST00000599848 CNOT1A5YKK6 2376 aaKnown RBP16.71■□□□□ 0.27
UPF1-207ENST00000599848 PMS2P5A8MQ11 134 aa16.71■□□□□ 0.27
UPF1-207ENST00000599848 ATXN8Q156A1 80 aa16.71■□□□□ 0.27
UPF1-207ENST00000599848 RPL15P61313 204 aaKnown RBP16.71■□□□□ 0.26
UPF1-207ENST00000599848 FGF16O43320 207 aa16.7■□□□□ 0.26
UPF1-207ENST00000599848 CFHR2P36980 270 aa16.7■□□□□ 0.26
UPF1-207ENST00000599848 WNK3Q9BYP7 1800 aa16.7■□□□□ 0.26
UPF1-207ENST00000599848 LYPD3O95274 346 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms