RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 SLC25A40Q8TBP6 338 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 C4orf3Q8WVX3 66 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 PATE1Q8WXA2 126 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 DNAJC9Q8WXX5 260 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 ITFG2Q969R8 447 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 GPR146Q96CH1 333 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 SLAMF6Q96DU3 332 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 TEX37Q96LM6 180 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 OBSCN-AS1Q96MR7 158 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 SIGMAR1Q99720 223 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 CMSS1Q9BQ75 279 aaKnown RBP0.14□□□□□ -2.39
SPG11-222ENST00000560435 MRPL57Q9BQC6 102 aaKnown RBP0.14□□□□□ -2.39
SPG11-222ENST00000560435 TRIM4Q9C037 500 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 IMUPQ9GZP8 106 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 CCDC90BQ9GZT6 254 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 ACER3Q9NUN7 267 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 UBAP1Q9NZ09 502 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 KLK9Q9UKQ9 250 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 SLC35A3Q9Y2D2 325 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 C22orf24Q9Y442 160 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 V9GYY5 206 aaPredicted RBP0.14□□□□□ -2.39
SPG11-222ENST00000560435 RTL1A6NKG5 1358 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 ANAPC1Q9H1A4 1944 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 ASH1LQ9NR48 2969 aaKnown RBP0.14□□□□□ -2.39
SPG11-222ENST00000560435 SBF1O95248 1867 aa0.14□□□□□ -2.39
SPG11-222ENST00000560435 FMN1Q68DA7 1419 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 SYNE2Q8WXH0 6885 aaKnown RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 DOCK3Q8IZD9 2030 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 TRBV6-7A0A0A0MS04 114 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 TRBV6-8A0A0A6YYG3 113 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 TRAV1-1A0A0B4J248 108 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 FAM159BA6NKW6 160 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 A8MWV9 139 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 ZNF736B4DX44 427 aaPredicted RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 E7EUB6 86 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 CCL16O15467 120 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 CYB5BO43169 146 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 NUPR1O60356 82 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 PROSCO94903 275 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 DHFRP00374 187 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 IFNA6P05013 189 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 SMIM17P0DL12 118 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 HSD11B1P28845 292 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 SRP14P37108 136 aaKnown RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 ANP32AP39687 249 aaKnown RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 ATP5G3P48201 142 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 PIGPP57054 158 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 DYNLT1P63172 113 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 EIF5AP63241 154 aaKnown RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 MPV17LQ2QL34 196 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 C22orf39Q6P5X5 142 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 GOLT1AQ6ZVE7 132 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 GRINAQ7Z429 371 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 KRTAP19-3Q7Z4W3 81 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 PDZD9Q8IXQ8 264 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 KRT222Q8N1A0 295 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 Q8N6K4 173 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 OR10X1Q8NGY0 326 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 OR2T10Q8NGZ9 312 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 STAG3L4Q8TBR4 150 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 TEX47Q8TBZ9 253 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 GNPDA2Q8TDQ7 276 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 FAM172AQ8WUF8 416 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 CANT1Q8WVQ1 401 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 PPP1R14BQ96C90 147 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 BTF3L4Q96K17 158 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 YPEL2Q96QA6 119 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 LYSMD1Q96S90 227 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 HIST1H2BLQ99880 126 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 PRADC1Q9BSG0 188 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 TMEM70Q9BUB7 260 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 KIFC1Q9BW19 673 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 NMNAT1Q9HAN9 279 aaPredicted RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 BCL2L10Q9HD36 194 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 C14orf132Q9NPU4 83 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 ARMC1Q9NVT9 282 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 RASL12Q9NYN1 266 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 UTP11Q9Y3A2 253 aaKnown RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 RFX7Q2KHR2 1363 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 CCDC88AQ3V6T2 1871 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 TNRC6AQ8NDV7 1962 aaKnown RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 KIAA1549Q9HCM3 1950 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 SYNE1Q8NF91 8797 aaKnown RBP0.13□□□□□ -2.39
SPG11-222ENST00000560435 DENND4CQ5VZ89 1909 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 RIMBP3CA6NJZ7 1639 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 RIMBP3BA6NNM3 1639 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 RIMBP3Q9UFD9 1639 aa0.13□□□□□ -2.39
SPG11-222ENST00000560435 EML6Q6ZMW3 1958 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 LAMB4A4D0S4 1761 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 PCF11O94913 1555 aaKnown RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 COL1A1P02452 1464 aaPredicted RBP0.12□□□□□ -2.39
SPG11-222ENST00000560435 TRGV10A0A0A0MS01 117 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 TRAV3A0A0B4J244 114 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 IGHV1-58A0A0C4DH39 117 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 TRBV6-4A0A1B0GX49 114 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 TCRBV4S1A1TA0A5B7 111 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 C1orf196B1AJZ1 125 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 B4DSR2 109 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 CLDN25C9JDP6 229 aa0.12□□□□□ -2.39
SPG11-222ENST00000560435 TAX1BP3O14907 124 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms