RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 EMDP50402 254 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 ZNF157P51786 506 aaPredicted RBP6.84□□□□□ -1.32
USP3-211ENST00000559257 RPRMLQ8N4K4 120 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 KLF16Q9BXK1 252 aaPredicted RBP6.84□□□□□ -1.32
USP3-211ENST00000559257 LSM7Q9UK45 103 aaKnown RBP6.84□□□□□ -1.32
USP3-211ENST00000559257 PTPRSQ13332 1948 aa6.84□□□□□ -1.32
USP3-211ENST00000559257 TRAV2A0A0B4J234 112 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 RBAKDNA6NC62 111 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 ZNF561-AS1K7EIQ3 104 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 OVOL1O14753 267 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 MPDU1O75352 247 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 ZNF672Q499Z4 452 aaPredicted RBP6.83□□□□□ -1.32
USP3-211ENST00000559257 C20orf173Q96LM9 149 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 SLC25A2Q9BXI2 301 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 SIT1Q9Y3P8 196 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 PCDH15Q96QU1 1955 aa6.83□□□□□ -1.32
USP3-211ENST00000559257 PMS2P5A8MQ11 134 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 CD7P09564 240 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 ZNF823P16415 610 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 POLR2LP62875 67 aaKnown RBP6.82□□□□□ -1.32
USP3-211ENST00000559257 TFF3Q07654 80 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 KISS1Q15726 138 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 FHL5Q5TD97 284 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 Q8N7P7 452 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 POM121L12Q8N7R1 296 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 IGF2BP2-AS1Q96M15 143 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 FOXQ1Q9C009 403 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 CACNG5Q9UF02 275 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 TRAV8-4A0A0B4J246 113 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 FAM240AA0A1B0GVK7 77 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 HOXA3O43365 443 aaPredicted RBP6.82□□□□□ -1.32
USP3-211ENST00000559257 COX7CP15954 63 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 RPL13AP40429 203 aaKnown RBP6.82□□□□□ -1.32
USP3-211ENST00000559257 PSMB2P49721 201 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 FBXW4P57775 412 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 EBI3Q14213 229 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 RSPO1Q2MKA7 263 aaPredicted RBP6.82□□□□□ -1.32
USP3-211ENST00000559257 C1orf195Q5TG92 126 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 DGAT2L6Q6ZPD8 337 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 Q6ZR03 302 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 ZNF818PQ6ZRF7 136 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 ABHD12Q8N2K0 398 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 RFESDQ8TAC1 157 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 SNRNP40Q96DI7 357 aaKnown RBP6.82□□□□□ -1.32
USP3-211ENST00000559257 AICDAQ9GZX7 198 aa6.82□□□□□ -1.32
USP3-211ENST00000559257 C6orf106Q9H6K1 298 aaPredicted RBP6.82□□□□□ -1.32
USP3-211ENST00000559257 TRAV8-1A0A0A6YYK1 113 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 MYMXA0A1B0GTQ4 84 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 LTAP01374 205 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 HLA-DMBP28068 263 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 PLA2G5P39877 138 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 CRIP3Q6Q6R5 217 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 LINC00336Q6ZUF6 198 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 GOLT1AQ6ZVE7 132 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 SLC25A39Q9BZJ4 359 aaPredicted RBP6.81□□□□□ -1.32
USP3-211ENST00000559257 WDR83OSQ9Y284 106 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 COL4A2P08572 1712 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 TMED7-TICAM2A0A0A6YYA0 188 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 IGKV1-9A0A0C4DH69 117 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 NPYP01303 97 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 TIRAPP58753 221 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 PLGLB1Q02325 96 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 ZC2HC1BQ5TFG8 222 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 ZNF493Q6ZR52 646 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 Q6ZRM9 215 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 DTX2Q86UW9 622 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 PLEKHB2Q96CS7 222 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 ZNF414Q96IQ9 312 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 C9orf85Q96MD7 179 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 PLA2G2FQ9BZM2 168 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 PRDM6Q9NQX0 595 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 EPDR1Q9UM22 224 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 TP53TG1Q9Y2A0 90 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 PKIGQ9Y2B9 76 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 KLK5Q9Y337 293 aaPredicted RBP6.81□□□□□ -1.32
USP3-211ENST00000559257 PYGO1Q9Y3Y4 419 aa6.81□□□□□ -1.32
USP3-211ENST00000559257 COL4A6Q14031 1691 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 THADAQ6YHU6 1953 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 TRBV7-3A0A075B6L6 115 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 TRACP01848 142 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 CTLA4P16410 223 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 FOXA3P55318 350 aaPredicted RBP6.8□□□□□ -1.32
USP3-211ENST00000559257 TXNDC8Q6A555 127 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 PDPNQ86YL7 162 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 AMN1Q8IY45 258 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 GJC3Q8NFK1 279 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 PILRAQ9UKJ1 303 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 GOLGA4Q13439 2230 aaKnown RBP6.8□□□□□ -1.32
USP3-211ENST00000559257 LY6LH3BQJ8 138 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 K7EM74 188 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 CACNG7P62955 275 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 Q6ZT83 130 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 APRG1Q8IVJ8 170 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 FGFRL1Q8N441 504 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 TAC3Q9UHF0 121 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 PTPRBP23467 1997 aa6.8□□□□□ -1.32
USP3-211ENST00000559257 CACNA1CQ13936 2221 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 RALGAPA1Q6GYQ0 2036 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 HIGD1CA8MV81 97 aa6.79□□□□□ -1.32
USP3-211ENST00000559257 TIMM23O14925 209 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms