RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 GSN-AS1Q9NRJ2 163 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 ZNF355PQ9NSJ1 428 aa13.31□□□□□ -0.28
LDLR-206ENST00000557958 YTHDF2Q9Y5A9 579 aaKnown RBP13.31□□□□□ -0.28
LDLR-206ENST00000557958 TRAV30A0A087WSZ9 112 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 K7EIM0 57 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 PLXNB1O43157 2135 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 IGLC1P0CG04 106 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 IGHV4-31P0DP07 118 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 ORM2P19652 201 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 S100PP25815 95 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 PLP1P60201 277 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 UBE2L3P68036 154 aaKnown RBP13.3□□□□□ -0.28
LDLR-206ENST00000557958 KIAA0141Q14154 515 aaPredicted RBP13.3□□□□□ -0.28
LDLR-206ENST00000557958 FAM120AOSQ5T036 256 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 LINC00305Q7Z4B0 112 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 OR51G1Q8NGK1 321 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 OR1B1Q8NGR6 318 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 SLC25A2Q9BXI2 301 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 NIT2Q9NQR4 276 aa13.3□□□□□ -0.28
LDLR-206ENST00000557958 IGHV7-81A0A0B4J1V7 117 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 A0A1W2PRE2 83 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 CLDN34H7C241 214 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 NDUFB4O95168 129 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 HOXA5P20719 270 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 PRRC2AP48634 2157 aaKnown RBP13.29□□□□□ -0.28
LDLR-206ENST00000557958 BRD3OSQ6XYD6 125 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 CIARTQ8N365 385 aaPredicted RBP13.29□□□□□ -0.28
LDLR-206ENST00000557958 TMEM68Q96MH6 324 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 CSMD1Q96PZ7 3565 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 IGLV11-55A0A075B6I3 123 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 LINC00587B1AMM8 73 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 HIST1H1BP16401 226 aaKnown RBP13.29□□□□□ -0.28
LDLR-206ENST00000557958 RPS10P46783 165 aaKnown RBP13.29□□□□□ -0.28
LDLR-206ENST00000557958 NDPQ00604 133 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 ELOBQ15370 118 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 S100A7AQ86SG5 101 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 C11orf52Q96A22 123 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 ZNF48Q96MX3 618 aaPredicted RBP13.29□□□□□ -0.28
LDLR-206ENST00000557958 PAXXQ9BUH6 204 aa13.29□□□□□ -0.28
LDLR-206ENST00000557958 RPL23P62829 140 aaKnown RBP13.28□□□□□ -0.28
LDLR-206ENST00000557958 PATE2Q6UY27 113 aa13.28□□□□□ -0.28
LDLR-206ENST00000557958 SGMS2Q8NHU3 365 aa13.28□□□□□ -0.28
LDLR-206ENST00000557958 Q8WTZ3 238 aa13.28□□□□□ -0.28
LDLR-206ENST00000557958 ZNF503Q96F45 646 aa13.28□□□□□ -0.28
LDLR-206ENST00000557958 FAM167A-AS1Q96KT0 104 aa13.28□□□□□ -0.28
LDLR-206ENST00000557958 MEGF9Q9H1U4 602 aa13.28□□□□□ -0.28
LDLR-206ENST00000557958 MOB4Q9Y3A3 225 aa13.28□□□□□ -0.28
LDLR-206ENST00000557958 SCO2A0A1W2PP80 73 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 TGOLN2O43493 480 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 AVPP01185 164 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 OR10J4P0C629 311 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 RD3LP0DJH9 198 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 IGHV4-38-2P0DP08 117 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 NPPCP23582 126 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 MFAP4P55083 255 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 ASPHD1Q5U4P2 390 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 LURAP1LQ8IV03 231 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 FOXC2Q99958 501 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 HIGD1AQ9Y241 93 aa13.27□□□□□ -0.28
LDLR-206ENST00000557958 ABCA2Q9BZC7 2435 aa13.27□□□□□ -0.29
LDLR-206ENST00000557958 GNG7O60262 68 aa13.27□□□□□ -0.29
LDLR-206ENST00000557958 CDX1P47902 265 aaPredicted RBP13.27□□□□□ -0.29
LDLR-206ENST00000557958 ANAPC16Q96DE5 110 aa13.27□□□□□ -0.29
LDLR-206ENST00000557958 SVEP1Q4LDE5 3571 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 PSG1P11464 419 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 LYZP61626 148 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 TIGITQ495A1 244 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 CYB5R2Q6BCY4 276 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 FAM110DQ8TAY7 271 aaPredicted RBP13.26□□□□□ -0.29
LDLR-206ENST00000557958 FANCD2OSQ96PS1 177 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 TMUB1Q9BVT8 246 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 HECTD1Q9ULT8 2610 aa13.26□□□□□ -0.29
LDLR-206ENST00000557958 TRAV5A0A0B4J249 113 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 CXCL1P09341 107 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 CD99P14209 185 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 MORN5Q5VZ52 161 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 C16orf82Q7Z2V1 217 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 C5orf56Q8N8D9 126 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 C21orf62Q9NYP8 219 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 SOX21Q9Y651 276 aaPredicted RBP13.25□□□□□ -0.29
LDLR-206ENST00000557958 A0A0U1RQK1 487 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 H7BYZ3 331 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 J3QLI3 93 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 TOMM40O96008 361 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 IGKV1-17P01599 117 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 EGR2P11161 476 aaPredicted RBP13.25□□□□□ -0.29
LDLR-206ENST00000557958 YPEL3P61236 119 aaPredicted RBP13.25□□□□□ -0.29
LDLR-206ENST00000557958 KLF17Q5JT82 389 aaPredicted RBP13.25□□□□□ -0.29
LDLR-206ENST00000557958 UNQ5815/PRO19632Q6UWF5 114 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 LINC01551Q86U37 167 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 OR5B12Q96R08 314 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 TXN2Q99757 166 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 LY96Q9Y6Y9 160 aa13.25□□□□□ -0.29
LDLR-206ENST00000557958 C9JCJ5 164 aa13.24□□□□□ -0.29
LDLR-206ENST00000557958 PPP1R2P9O14990 202 aa13.24□□□□□ -0.29
LDLR-206ENST00000557958 Q56UQ5 140 aa13.24□□□□□ -0.29
LDLR-206ENST00000557958 OR5T1Q8NG75 326 aa13.24□□□□□ -0.29
LDLR-206ENST00000557958 HSPB9Q9BQS6 159 aa13.24□□□□□ -0.29
LDLR-206ENST00000557958 DERL1Q9BUN8 251 aa13.24□□□□□ -0.29
LDLR-206ENST00000557958 GSX1Q9H4S2 264 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms