RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 FBXW4P57775 412 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 RBPMS2Q6ZRY4 209 aaKnown RBP11.19□□□□□ -0.62
SHMT2-226ENST00000556825 MIR17HGQ75NE6 70 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 OR13C6PQ8NH95 151 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 ZNF414Q96IQ9 312 aa11.19□□□□□ -0.62
SHMT2-226ENST00000556825 TRBV6-6A0A0A6YYG2 114 aa11.18□□□□□ -0.62
SHMT2-226ENST00000556825 NPIPB11E5RHQ5 1161 aa11.18□□□□□ -0.62
SHMT2-226ENST00000556825 SRYQ05066 204 aa11.18□□□□□ -0.62
SHMT2-226ENST00000556825 SPINK9Q5DT21 86 aa11.18□□□□□ -0.62
SHMT2-226ENST00000556825 MBNL2Q5VZF2 373 aaKnown RBP11.18□□□□□ -0.62
SHMT2-226ENST00000556825 FAM234AQ9H0X4 552 aa11.18□□□□□ -0.62
SHMT2-226ENST00000556825 PLEKHA3Q9HB20 300 aa11.18□□□□□ -0.62
SHMT2-226ENST00000556825 A0A096LNJ9 63 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 FRG2CA6NGY1 282 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 C9JAW5 83 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 F5H768 121 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 DLL1O00548 723 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 COL8A2P25067 703 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 ZNF137PP52743 207 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 C1orf61Q13536 156 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 TMEM158Q8WZ71 300 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 HIGD1AQ9Y241 93 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 LSM4Q9Y4Z0 139 aaKnown RBP11.17□□□□□ -0.62
SHMT2-226ENST00000556825 TRANK1O15050 2925 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 CEP290O15078 2479 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 SPRNQ5BIV9 151 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 RHBDD2Q6NTF9 364 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 SBSPONQ8IVN8 264 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 FADS6Q8N9I5 356 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 PRSS3P2Q8NHM4 247 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 OBP2BQ9NPH6 170 aa11.17□□□□□ -0.62
SHMT2-226ENST00000556825 IGKV2D-26A0A0A0MRZ7 120 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 EPOPA6NHQ4 379 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 ZNF474Q6S9Z5 364 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-226ENST00000556825 C20orf204Q6ZNR8 217 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 SPTSSAQ969W0 71 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 COQ2Q96H96 371 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 TMEM101Q96IK0 257 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 C7orf69Q9H7B7 122 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 A0A1B0GX51 115 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 MOB3BQ86TA1 216 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 DRAM1Q8N682 238 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 C3orf56Q8N813 242 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 C1orf159Q96HA4 380 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 PGLYRP4Q96LB8 373 aa11.16□□□□□ -0.62
SHMT2-226ENST00000556825 LINC01548A6NM66 108 aa11.15□□□□□ -0.62
SHMT2-226ENST00000556825 PRSS46E5RG02 174 aa11.15□□□□□ -0.62
SHMT2-226ENST00000556825 HSPB6O14558 160 aa11.15□□□□□ -0.62
SHMT2-226ENST00000556825 MORN3Q6PF18 240 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-226ENST00000556825 CIARTQ8N365 385 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-226ENST00000556825 RND1Q92730 232 aa11.15□□□□□ -0.62
SHMT2-226ENST00000556825 ZNF503Q96F45 646 aa11.15□□□□□ -0.62
SHMT2-226ENST00000556825 PLA2G2FQ9BZM2 168 aa11.15□□□□□ -0.62
SHMT2-226ENST00000556825 C21orf62Q9NYP8 219 aa11.15□□□□□ -0.62
SHMT2-226ENST00000556825 TRAV24A0A0B4J272 114 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 SHISA9B4DS77 424 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 HLA-DRB4P13762 266 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 PSMB2P49721 201 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 TBC1D28Q2M2D7 210 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 RITA1Q96K30 269 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 SGK494Q96LW2 274 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 TTTY13Q9BZ97 58 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 RPP21Q9H633 154 aaKnown RBP11.15□□□□□ -0.63
SHMT2-226ENST00000556825 HLA-DRB4X5D2U9 266 aa11.15□□□□□ -0.63
SHMT2-226ENST00000556825 A0A1W2PQF6 199 aa11.14□□□□□ -0.63
SHMT2-226ENST00000556825 A8MWV9 139 aa11.14□□□□□ -0.63
SHMT2-226ENST00000556825 LINC01565O15544 149 aa11.14□□□□□ -0.63
SHMT2-226ENST00000556825 KIR2DL1P43626 348 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-226ENST00000556825 ZNF816Q0VGE8 651 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-226ENST00000556825 CT83Q5H943 113 aa11.14□□□□□ -0.63
SHMT2-226ENST00000556825 Q6ZQT7 251 aa11.14□□□□□ -0.63
SHMT2-226ENST00000556825 OR1L4Q8NGR5 311 aa11.14□□□□□ -0.63
SHMT2-226ENST00000556825 MRAPQ8TCY5 172 aa11.14□□□□□ -0.63
SHMT2-226ENST00000556825 NPFFO15130 113 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 ACTL6BO94805 426 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 SP1P08047 785 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 ACP1P24666 158 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 FGF12P61328 243 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 H2BFWTQ7Z2G1 175 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 CDX2Q99626 313 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-226ENST00000556825 GFRA4Q9GZZ7 299 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 PHPT1Q9NRX4 125 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-226ENST00000556825 HOXA3O43365 443 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-226ENST00000556825 IL4P05112 153 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 PRR20EP86478 221 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 PRR20CP86479 221 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 PRR20DP86480 221 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 PRR20BP86481 221 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 PRR20AP86496 221 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 TSACCQ96A04 125 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-226ENST00000556825 IFI27L1Q96BM0 104 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 DKK2Q9UBU2 259 aa11.13□□□□□ -0.63
SHMT2-226ENST00000556825 HAX1O00165 279 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 DNPH1O43598 174 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 RPS28P62857 69 aaKnown RBP11.12□□□□□ -0.63
SHMT2-226ENST00000556825 ANKRD29Q8N6D5 301 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 OR13A1Q8NGR1 328 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 PRADC1Q9BSG0 188 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 PIMREGQ9BSJ6 248 aa11.12□□□□□ -0.63
SHMT2-226ENST00000556825 UCNP55089 124 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms