RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 RPLP1P05386 114 aaKnown RBP6.74□□□□□ -1.33
SYNE2-220ENST00000555612 PMCHL1Q16048 86 aa6.74□□□□□ -1.33
SYNE2-220ENST00000555612 NR2C2APQ86WQ0 139 aa6.74□□□□□ -1.33
SYNE2-220ENST00000555612 IGKV2-40A0A087WW87 121 aaPredicted RBP6.74□□□□□ -1.33
SYNE2-220ENST00000555612 IGKV2D-40P01614 121 aaPredicted RBP6.74□□□□□ -1.33
SYNE2-220ENST00000555612 IFI27P40305 119 aaPredicted RBP6.74□□□□□ -1.33
SYNE2-220ENST00000555612 SPSB3Q6PJ21 355 aa6.74□□□□□ -1.33
SYNE2-220ENST00000555612 FAM89BQ8N5H3 189 aa6.74□□□□□ -1.33
SYNE2-220ENST00000555612 EPDR1Q9UM22 224 aa6.74□□□□□ -1.33
SYNE2-220ENST00000555612 H0YJW9 148 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 ATP5LO75964 103 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 HEATR5BQ9P2D3 2071 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 OVOL3O00110 214 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 VENTXO95231 258 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 PSG1P11464 419 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 VCX2Q9H322 139 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 TRBV7-1A0A0A6YYK4 115 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 TRBV7-9A0A0J9YWB2 115 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 ADARB2-AS1A8MUL3 147 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 PRTN3P24158 256 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 COTL1Q14019 142 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 Q6AWC8 147 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 ERASQ7Z444 233 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 IMMP2LQ96T52 175 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 RNF5Q99942 180 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 C11orf68Q9H3H3 251 aaKnown RBP6.73□□□□□ -1.33
SYNE2-220ENST00000555612 IL36BQ9NZH7 164 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 GREB1Q4ZG55 1949 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 DIDO1Q9BTC0 2240 aaKnown RBP6.73□□□□□ -1.33
SYNE2-220ENST00000555612 TRAV12-3A0A0B4J271 114 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 DEFB130BP0DP73 79 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 DEFB130AP0DP74 79 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 SLC25A34Q6PIV7 304 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 ORMDL3Q8N138 153 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 USMG5Q96IX5 58 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 PEF1Q9UBV8 284 aaKnown RBP6.73□□□□□ -1.33
SYNE2-220ENST00000555612 MYO7BQ6PIF6 2116 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 TRAV3A0A0B4J244 114 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 PMS2P5A8MQ11 134 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 NDUFA3O95167 84 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 PET117Q6UWS5 81 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 SCRT1Q9BWW7 348 aa6.73□□□□□ -1.33
SYNE2-220ENST00000555612 SBF1O95248 1867 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 A0A1B0GWJ7 208 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 HIGD1CA8MV81 97 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 CD5P06127 495 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 LINC00469Q8N7U9 141 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 RNASE7Q9H1E1 156 aaKnown RBP6.72□□□□□ -1.33
SYNE2-220ENST00000555612 SRRM4A7MD48 611 aaKnown RBP6.72□□□□□ -1.33
SYNE2-220ENST00000555612 C5orf24Q7Z6I8 188 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 PIP4P1Q86T03 277 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 SLX1AQ9BQ83 275 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 RHPN1-AS1Q9BWJ2 59 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 SEPSECSQ9HD40 501 aaKnown RBP6.72□□□□□ -1.33
SYNE2-220ENST00000555612 IGHV1-69DA0A0B4J2H0 117 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 IGHV1-69P01742 117 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 CD28P10747 220 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 FABP2P12104 132 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 C1orf122Q6ZSJ8 110 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 NPIPB5A8MRT5 1133 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.72□□□□□ -1.33
SYNE2-220ENST00000555612 DEFB104AQ8WTQ1 72 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 C1QTNF4Q9BXJ3 329 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 PNRC2Q9NPJ4 139 aaKnown RBP6.72□□□□□ -1.33
SYNE2-220ENST00000555612 SPTBN1Q01082 2364 aaKnown RBP6.72□□□□□ -1.33
SYNE2-220ENST00000555612 DOPEY2Q9Y3R5 2298 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 FAM223BA6NKX1 122 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 FAM90A9PA6NNJ1 464 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 DTX1Q86Y01 620 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 FAM223AQ8IWN6 122 aa6.72□□□□□ -1.33
SYNE2-220ENST00000555612 IGFL4Q6B9Z1 124 aa6.71□□□□□ -1.33
SYNE2-220ENST00000555612 COQ2Q96H96 371 aa6.71□□□□□ -1.33
SYNE2-220ENST00000555612 REG4Q9BYZ8 158 aa6.71□□□□□ -1.33
SYNE2-220ENST00000555612 RALGAPA1Q6GYQ0 2036 aa6.71□□□□□ -1.33
SYNE2-220ENST00000555612 NYNRINQ9P2P1 1898 aaKnown RBP6.71□□□□□ -1.33
SYNE2-220ENST00000555612 A0A1B0GW15 77 aa6.71□□□□□ -1.33
SYNE2-220ENST00000555612 INSP01308 110 aa6.71□□□□□ -1.33
SYNE2-220ENST00000555612 FAM169BQ8N8A8 192 aa6.71□□□□□ -1.33
SYNE2-220ENST00000555612 SLC25A39Q9BZJ4 359 aaPredicted RBP6.71□□□□□ -1.33
SYNE2-220ENST00000555612 TCF21O43680 179 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 CFPP27918 469 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 UBE2E1P51965 193 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 EFNB3Q15768 340 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 SIGLEC9Q9Y336 463 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 EVI2AP22794 236 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 NBASA2RRP1 2371 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 RBMY1BA6NDE4 496 aaKnown RBP6.71□□□□□ -1.34
SYNE2-220ENST00000555612 RBMY1EA6NEQ0 496 aaKnown RBP6.71□□□□□ -1.34
SYNE2-220ENST00000555612 SOD3P08294 240 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 RBMY1DP0C7P1 496 aaKnown RBP6.71□□□□□ -1.34
SYNE2-220ENST00000555612 RBMY1A1P0DJD3 496 aaKnown RBP6.71□□□□□ -1.34
SYNE2-220ENST00000555612 RBMY1CP0DJD4 496 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 SSBP4Q9BWG4 385 aaPredicted RBP6.71□□□□□ -1.34
SYNE2-220ENST00000555612 PGPEP1Q9NXJ5 209 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 CXorf65A6NEN9 183 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 ZNF815PA8K554 130 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 PKIAP61925 76 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 EXOC3-AS1Q8N2X6 119 aa6.71□□□□□ -1.34
SYNE2-220ENST00000555612 DEFB131AP59861 70 aa6.7□□□□□ -1.34
SYNE2-220ENST00000555612 SRSF4Q08170 494 aaKnown RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms