RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 MED29Q9NX70 200 aa1.27□□□□□ -2.21
VPS29-205ENST00000548539 TRAV12-1A0A0B4J245 112 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 GADD45GO95257 159 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 IFNA7P01567 189 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 IL9P15248 144 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 ARF6P62330 175 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 DHRS4L2Q6PKH6 230 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 SOSTDC1Q6X4U4 206 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 PDZD9Q8IXQ8 264 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 CLECL1Q8IZS7 167 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 LINC00301Q8NCQ3 95 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 HS3ST2Q9Y278 367 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 PCDH15Q96QU1 1955 aa1.26□□□□□ -2.21
VPS29-205ENST00000548539 TRBV6-8A0A0A6YYG3 113 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 TAX1BP3O14907 124 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 BANF1O75531 89 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 C1QBP02746 253 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 KRTAP10-4P60372 401 aaPredicted RBP1.25□□□□□ -2.21
VPS29-205ENST00000548539 NCALDP61601 193 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 C3orf56Q8N813 242 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 IMUPQ9GZP8 106 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 ACER3Q9NUN7 267 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 KLK9Q9UKQ9 250 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 LAMB2P55268 1798 aa1.25□□□□□ -2.21
VPS29-205ENST00000548539 FMN1Q68DA7 1419 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 MIA2Q96PC5 1412 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 AHNAK2Q8IVF2 5795 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 FREM1Q5H8C1 2179 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 MYOFQ9NZM1 2061 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 GEMIN2O14893 280 aaKnown RBP1.24□□□□□ -2.21
VPS29-205ENST00000548539 TIMM17BO60830 172 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 HYPMO75409 117 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 GNG5P63218 68 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 BCL2L15Q5TBC7 163 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 Q8IYB0 196 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 EXOC3-AS1Q8N2X6 119 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 CCDC94Q9BW85 323 aaPredicted RBP1.24□□□□□ -2.21
VPS29-205ENST00000548539 STOML2Q9UJZ1 356 aa1.24□□□□□ -2.21
VPS29-205ENST00000548539 RIMBP3CA6NJZ7 1639 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 RIMBP3BA6NNM3 1639 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 RIMBP3Q9UFD9 1639 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 A0A087WX48 190 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 G3V2T6 193 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 NDUFB3O43676 98 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 ATG12O94817 140 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 ARL14EPLP0DKL9 152 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 CNBPP62633 177 aaKnown RBP1.23□□□□□ -2.21
VPS29-205ENST00000548539 PLCXD2Q0VAA5 305 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 ZNF418Q8TF45 676 aaPredicted RBP1.23□□□□□ -2.21
VPS29-205ENST00000548539 TMEM126AQ9H061 195 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 SS18L2Q9UHA2 77 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 PYCARDQ9ULZ3 195 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 COL4A5P29400 1685 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 PLXND1Q9Y4D7 1925 aa1.23□□□□□ -2.21
VPS29-205ENST00000548539 MICAL3Q7RTP6 2002 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 RP1L1Q8IWN7 2480 aaPredicted RBP1.22□□□□□ -2.21
VPS29-205ENST00000548539 IGKV2D-26A0A0A0MRZ7 120 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 TRGV10A0A0A0MS01 117 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 TRBV6-7A0A0A0MS04 114 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 CCDC160A6NGH7 325 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 TMEM256-PLSCR3K7ERE1 68 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 M0R378 163 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 NDUFC2O95298 119 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 RPL19P84098 196 aaKnown RBP1.22□□□□□ -2.21
VPS29-205ENST00000548539 C1orf137Q5JT78 98 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 C22orf39Q6P5X5 142 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 TEX261Q6UWH6 196 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 OR2T35Q8NGX2 323 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 TEX47Q8TBZ9 253 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 AP3S1Q92572 193 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 ODF3Q96PU9 254 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 YPEL2Q96QA6 119 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 C14orf132Q9NPU4 83 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 PCTPQ9UKL6 214 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 PRNDQ9UKY0 176 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 U3KQ87 197 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 ANAPC1Q9H1A4 1944 aa1.22□□□□□ -2.21
VPS29-205ENST00000548539 RTTNQ86VV8 2226 aa1.21□□□□□ -2.21
VPS29-205ENST00000548539 HEATR5BQ9P2D3 2071 aa1.21□□□□□ -2.22
VPS29-205ENST00000548539 UBE2BP63146 152 aa1.21□□□□□ -2.22
VPS29-205ENST00000548539 SNCBQ16143 134 aa1.21□□□□□ -2.22
VPS29-205ENST00000548539 PAIP2Q9BPZ3 127 aaKnown RBP1.21□□□□□ -2.22
VPS29-205ENST00000548539 SLC25A21Q9BQT8 299 aaPredicted RBP1.21□□□□□ -2.22
VPS29-205ENST00000548539 SDK1Q7Z5N4 2213 aa1.21□□□□□ -2.22
VPS29-205ENST00000548539 CAMSAP1Q5T5Y3 1602 aa1.21□□□□□ -2.22
VPS29-205ENST00000548539 NFYBP25208 207 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 PPP1R2P41236 205 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 AKR1C8PQ5T2L2 129 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 PPP1R2P3Q6NXS1 205 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 OBSCN-AS1Q96MR7 158 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 CDC42SE1Q9NRR8 79 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 RASL12Q9NYN1 266 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 ZFP30Q9Y2G7 519 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 MED13Q9UHV7 2174 aa1.2□□□□□ -2.22
VPS29-205ENST00000548539 DUXBA0A1W2PPF3 345 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 ZNF736B4DX44 427 aaPredicted RBP1.19□□□□□ -2.22
VPS29-205ENST00000548539 H7C1C5 153 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 IFNA1P01562 189 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 G0S2P27469 103 aa1.19□□□□□ -2.22
VPS29-205ENST00000548539 PHBP35232 272 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms