RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 KALRNO60229 2985 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 PCDH15Q96QU1 1955 aa2.03□□□□□ -2.08
CD44-223ENST00000526553 CFAP46Q8IYW2 2715 aa2.03□□□□□ -2.09
CD44-223ENST00000526553 DOPEY1Q5JWR5 2465 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 A0A087WUU8 490 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 PVALEFA0A1B0GWK0 134 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 VPS37CA5D8V6 355 aaPredicted RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 CLDN24A6NM45 220 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 OR5K4A6NMS3 321 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 H3BQV1 296 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 KPNA4O00629 521 aaPredicted RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 COX7A2LO14548 114 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 CTXN2P0C2S0 81 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 HLA-EP13747 358 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 LGALS3P17931 250 aaKnown RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 PPP1R2P41236 205 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 SERPINB10P48595 397 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 CDK9P50750 372 aaKnown RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 TAS2R20P59543 309 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 AP3S2P59780 193 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 PSME3P61289 254 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 GNG11P61952 73 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 POLR2GP62487 172 aaKnown RBP eCLIP2.02□□□□□ -2.09
CD44-223ENST00000526553 TNFAIP6P98066 277 aaPredicted RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 TNFRSF9Q07011 255 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 AESQ08117 197 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 PMAIP1Q13794 54 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 LGALS9BQ3B8N2 356 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 LGALS9CQ6DKI2 356 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 SMARCD3Q6STE5 483 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 UMODL1-AS1Q8N2C9 162 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 LRRC25Q8N386 305 aaPredicted RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 CLDN22Q8N7P3 220 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 CNEP1R1Q8N9A8 125 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 OR5C1Q8NGR4 320 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 CLDND2Q8NHS1 167 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 LHFPL5Q8TAF8 219 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 DGCR14Q96DF8 476 aaKnown RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 C20orf166-AS1Q96NR2 134 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 MIEN1Q9BRT3 115 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 CXCL16Q9H2A7 254 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 TUBA4BQ9H853 241 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 ARMC1Q9NVT9 282 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 RSL24D1Q9UHA3 163 aaKnown RBP2.02□□□□□ -2.09
CD44-223ENST00000526553 STOML2Q9UJZ1 356 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 COL12A1Q99715 3063 aa2.02□□□□□ -2.09
CD44-223ENST00000526553 MGAQ8IWI9 3026 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 NBASA2RRP1 2371 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 SPTBN1Q01082 2364 aaKnown RBP2.01□□□□□ -2.09
CD44-223ENST00000526553 ICE1Q9Y2F5 2266 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 ATMQ13315 3056 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 NBPF19A0A087WUL8 3843 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 EEF1E1-BLOC1S5C9J1V9 151 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 TCRBP04435 133 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 APODP05090 189 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 HMGN1P05114 100 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 UCHL1P09936 223 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 RAB4BP61018 213 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 RAB14P61106 215 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 VBP1P61758 197 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 LSM6P62312 80 aaKnown RBP2.01□□□□□ -2.09
CD44-223ENST00000526553 GNGT1P63211 74 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 CTAG1AP78358 180 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 IFITM2Q01629 132 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 SRSF6Q13247 344 aaKnown RBP2.01□□□□□ -2.09
CD44-223ENST00000526553 SPA17Q15506 151 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 CCDC58Q4VC31 144 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 ZNF767PQ75MW2 155 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 TMEM86BQ8N661 226 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 OR1L8Q8NGR8 309 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 OR13C8Q8NGS7 320 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 RPS4Y2Q8TD47 263 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 SFRP2Q96HF1 295 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 LXNQ9BS40 222 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 PECRQ9BY49 303 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 CCDC90BQ9GZT6 254 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 XAGE1AQ9HD64 81 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 MRPL40Q9NQ50 206 aaKnown RBP2.01□□□□□ -2.09
CD44-223ENST00000526553 C8orf4Q9NR00 106 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.01□□□□□ -2.09
CD44-223ENST00000526553 CCL26Q9Y258 94 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 COQ4Q9Y3A0 265 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 UTP11Q9Y3A2 253 aaKnown RBP2.01□□□□□ -2.09
CD44-223ENST00000526553 AP4S1Q9Y587 144 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 TEX15Q9BXT5 2789 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 ZFC3H1O60293 1989 aaKnown RBP2.01□□□□□ -2.09
CD44-223ENST00000526553 PLXNA2O75051 1894 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 ABCA12Q86UK0 2595 aa2.01□□□□□ -2.09
CD44-223ENST00000526553 RP1L1Q8IWN7 2480 aaPredicted RBP2□□□□□ -2.09
CD44-223ENST00000526553 TGIF2-C20orf24A0A0A6YYL0 155 aa2□□□□□ -2.09
CD44-223ENST00000526553 A0A0J9YX75 114 aa2□□□□□ -2.09
CD44-223ENST00000526553 PSMD12O00232 456 aaPredicted RBP2□□□□□ -2.09
CD44-223ENST00000526553 CHP2O43745 196 aa2□□□□□ -2.09
CD44-223ENST00000526553 ZNF73O43830 326 aaPredicted RBP2□□□□□ -2.09
CD44-223ENST00000526553 KCNE1P15382 129 aa2□□□□□ -2.09
CD44-223ENST00000526553 BLVRBP30043 206 aaPredicted RBP2□□□□□ -2.09
CD44-223ENST00000526553 FUSP35637 526 aaKnown RBP eCLIP2□□□□□ -2.09
CD44-223ENST00000526553 XCL1P47992 114 aa2□□□□□ -2.09
CD44-223ENST00000526553 FXYD7P58549 80 aa2□□□□□ -2.09
CD44-223ENST00000526553 AP1S1P61966 158 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms