RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 PFN1P07737 140 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-205ENST00000503057 CHCHD1Q96BP2 118 aaKnown RBP8.76□□□□□ -1.01
LIMCH1-205ENST00000503057 LRP4O75096 1905 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 TCF21O43680 179 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 TMEM155Q4W5P6 130 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 ORMDL3Q8N138 153 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 A0A0G2JLM5 398 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 CA1P00915 261 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 TCRAP04437 139 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 CD24P25063 80 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 VMO1Q7Z5L0 202 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 CENPVQ7Z7K6 275 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 ZNF329Q86UD4 541 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 BEND2Q8NDZ0 799 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 CACNA1DQ01668 2161 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 TEX29Q8N6K0 151 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 PRDM13Q9H4Q3 707 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 TRBV20OR9-2A0A075B6H5 130 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 RPL13AP40429 203 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 ZNF134P52741 427 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 VWC2Q2TAL6 325 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 IGF2-ASQ6U949 168 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 LINC00311Q8N616 119 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 SMIM12Q96EX1 92 aa8.75□□□□□ -1.01
LIMCH1-205ENST00000503057 IGHV3-66A0A0C4DH42 116 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 OR5AN1Q8NGI8 311 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 CYYR1Q96J86 154 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 ZNF414Q96IQ9 312 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 SCRT1Q9BWW7 348 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 IGHV3OR16-13A0A075B7E8 117 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 IGHV3-74A0A0B4J1X5 117 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 TFPI2P48307 235 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 RHOGP84095 191 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 DUX4L9Q6RFH8 374 aaPredicted RBP8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 ASCL2Q99929 193 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 FABP5P3A8MUU1 101 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 IGHV2-5P01817 119 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 COL8A2P25067 703 aa8.74□□□□□ -1.01
LIMCH1-205ENST00000503057 ZNF407Q9C0G0 2248 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 A0A1W2PPI3 338 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 K7ENP7 123 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 SNCGO76070 127 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 TSPOP30536 169 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 HIST1H1AQ02539 215 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 POU2AF1Q16633 256 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 ZNRD1Q9P1U0 126 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 CEACAM4O75871 244 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 LINC00614P0C842 121 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 EFNA4P52798 201 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 MLANAQ16655 118 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 C5orf64Q2M2E5 130 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 TMEM249Q2WGJ8 235 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 LYPD1Q8N2G4 141 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 TCTAP57738 103 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 ZNF207O43670 478 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 TOMM40O96008 361 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 TYMSP04818 313 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 HTN1P15515 57 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 SNRPD3P62318 126 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 SRSF9Q13242 221 aaKnown RBP eCLIP8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 DGAT2L7PQ6IED9 249 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 PLA2G2EQ9NZK7 142 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 ADAMTS9Q9P2N4 1935 aa8.73□□□□□ -1.01
LIMCH1-205ENST00000503057 PMS2P5A8MQ11 134 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 ASIPP42127 132 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 KLRD1Q13241 179 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 PSMG4Q5JS54 123 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 NIT1Q86X76 327 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 C14orf144Q96I85 54 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 KIAA2026Q5HYC2 2103 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 HEATR1Q9H583 2144 aaKnown RBP8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 SAMD13Q5VXD3 122 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 NUP35Q8NFH5 326 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 IGHV3-49A0A0A0MS15 119 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 A0A1W2PNU3 283 aaPredicted RBP8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 LHFPL4Q7Z7J7 247 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 TMEM256Q8N2U0 113 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 PCDH15Q96QU1 1955 aa8.72□□□□□ -1.01
LIMCH1-205ENST00000503057 IGHV3OR16-8A0A075B7F1 116 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 TRAV9-2A0A087WT02 112 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 PPP1R17O96001 155 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 C1orf194Q5T5A4 169 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 FAM159AQ6UWV7 190 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 EXOC3-AS1Q8N2X6 119 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 SLC25A2Q9BXI2 301 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 MRPL27Q9P0M9 148 aaKnown RBP8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 LHBP01229 141 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 LOXP28300 417 aaPredicted RBP8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 UQCRFS1P47985 274 aa8.71□□□□□ -1.01
LIMCH1-205ENST00000503057 CRIP3Q6Q6R5 217 aa8.71□□□□□ -1.02
LIMCH1-205ENST00000503057 C7orf69Q9H7B7 122 aa8.71□□□□□ -1.02
LIMCH1-205ENST00000503057 ATP5LO75964 103 aa8.71□□□□□ -1.02
LIMCH1-205ENST00000503057 PAX1P15863 534 aa8.71□□□□□ -1.02
LIMCH1-205ENST00000503057 C8orf31Q8N9H6 132 aa8.71□□□□□ -1.02
LIMCH1-205ENST00000503057 MSRB2Q9Y3D2 182 aa8.71□□□□□ -1.02
LIMCH1-205ENST00000503057 C7orf71A4D174 169 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 GFRA4Q9GZZ7 299 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 TMEM238LA0A1B0GVL6 79 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 A6NJY4 79 aa8.7□□□□□ -1.02
LIMCH1-205ENST00000503057 DCAF16Q9NXF7 216 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms