RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TMEM238C9JI98 176 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 F8W036 122 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 HMGB3O15347 200 aaKnown RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 OR2T1O43869 369 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 PIAS1O75925 651 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 OR2B3O76000 313 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 METTL15P1P0C7V9 234 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 RNASE3P12724 160 aaKnown RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 CASP1P29466 404 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 ERP29P30040 261 aaKnown RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 AKR1C3P42330 323 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 GNG10P50151 68 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 PIGPP57054 158 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 HSPE1P61604 102 aaKnown RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 ARF6P62330 175 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 RHEBQ15382 184 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 DEFB113Q30KQ7 82 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 KHDC3LQ587J8 217 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 RNASE10Q5GAN6 216 aaKnown RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 AAED1Q7RTV5 226 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 OR4E2Q8NGC2 313 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 OR13D1Q8NGV5 346 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 BTF3L4Q96K17 158 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 CEP19Q96LK0 163 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 C2orf50Q96LR7 162 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 PHB2Q99623 299 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 HOPXQ9BPY8 73 aaPredicted RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 SLC50A1Q9BRV3 221 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 YIPF3Q9GZM5 350 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 TVP23BQ9NYZ1 205 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 SS18L2Q9UHA2 77 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 UTP11Q9Y3A2 253 aaKnown RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 ARL5AQ9Y689 179 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 RYR3Q15413 4870 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 CFAP46Q8IYW2 2715 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 N4BP2Q86UW6 1770 aaPredicted RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 UBR2Q8IWV8 1755 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 RYR1P21817 5038 aa0.67□□□□□ -2.3
CPSF3-205ENST00000489629 SPTBN5Q9NRC6 3674 aaKnown RBP0.67□□□□□ -2.3
CPSF3-205ENST00000489629 TAF1LQ8IZX4 1826 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 FASNP49327 2511 aaKnown RBP0.66□□□□□ -2.3
CPSF3-205ENST00000489629 JMJD1CQ15652 2540 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 COL6A5A8TX70 2615 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 A0A0D9SG52 128 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 C2orf70A6NJV1 201 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 B4DSR2 109 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 M0R378 163 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 RPSAP08865 295 aaKnown RBP0.66□□□□□ -2.3
CPSF3-205ENST00000489629 OR4E1P0C645 316 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 S100A4P26447 101 aaKnown RBP0.66□□□□□ -2.3
CPSF3-205ENST00000489629 SSR2P43308 183 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 GNG5P63218 68 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 TMED2Q15363 201 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 ELOBQ15370 118 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 NDUFA5Q16718 116 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 DPPA3Q6W0C5 159 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 LYG2Q86SG7 212 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 Q8IYB0 196 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 OR10J5Q8NHC4 309 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 GNPDA2Q8TDQ7 276 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 AP3S1Q92572 193 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 SLAMF6Q96DU3 332 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 RETNLBQ9BQ08 111 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 REG4Q9BYZ8 158 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 HEATR1Q9H583 2144 aaKnown RBP0.66□□□□□ -2.3
CPSF3-205ENST00000489629 SETD2Q9BYW2 2564 aaPredicted RBP0.66□□□□□ -2.3
CPSF3-205ENST00000489629 MKI67P46013 3256 aaKnown RBP0.66□□□□□ -2.3
CPSF3-205ENST00000489629 CFAP47Q6ZTR5 3102 aa0.66□□□□□ -2.3
CPSF3-205ENST00000489629 ASH1LQ9NR48 2969 aaKnown RBP0.66□□□□□ -2.3
CPSF3-205ENST00000489629 VWFP04275 2813 aa0.65□□□□□ -2.3
CPSF3-205ENST00000489629 MIA2Q96PC5 1412 aa0.65□□□□□ -2.3
CPSF3-205ENST00000489629 LAMA2P24043 3122 aaKnown RBP0.65□□□□□ -2.3
CPSF3-205ENST00000489629 NBEAL2Q6ZNJ1 2754 aa0.65□□□□□ -2.3
CPSF3-205ENST00000489629 KIAA1549Q9HCM3 1950 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 KALRNO60229 2985 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 CC2D2AQ9P2K1 1620 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 COL24A1Q17RW2 1714 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 ZFHX3Q15911 3703 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 COL6A6A6NMZ7 2263 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 TRBV19A0A075B6N1 114 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 A0A087X0T9 212 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 TAX1BP3O14907 124 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 CYB5BO43169 146 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 MFSD11O43934 449 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 LYZL6O75951 148 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 TCL1BO95988 128 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 ANGP03950 147 aaKnown RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 LYNX1P0DP58 116 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 MGST1P10620 155 aaKnown RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 COX6A1P12074 109 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 KRTAP10-4P60372 401 aaPredicted RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 NCALDP61601 193 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 RHOBP62745 196 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 DYNLT1P63172 113 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 CDK5R1Q15078 307 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 SURF2Q15527 256 aaPredicted RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 TSNQ15631 228 aaKnown RBP0.65□□□□□ -2.31
CPSF3-205ENST00000489629 RRN3P1Q2M238 152 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 UNQ6190/PRO20217Q6UXQ8 127 aa0.65□□□□□ -2.31
CPSF3-205ENST00000489629 SOSTDC1Q6X4U4 206 aa0.65□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms